Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF622_chr5_16446519_16470800	1/1	a0001	477	388	90	69	181	14	32	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	a0002	477	3	0	0	3	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	a0003	477	2	2	0	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF622_chr5_16446519_16470800	0/0	a0004	477	1	0	1	0	0	0	copy fasta	ZNF622	chr5	16446519	16470800
ZNF623_chr8_143631019_143658730	0/1	a0001	496	376	86	68	164	18	39	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	a0002	496	4	0	0	4	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	a0003	496	2	1	0	0	0	1	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	a0004	496	2	0	0	2	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF623_chr8_143631019_143658730	0/0	a0005	496	1	1	0	0	0	0	copy fasta	ZNF623	chr8	143631019	143658730
ZNF624_chr17_16615734_16658850	0/1	a0001	865	231	68	34	101	6	21	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	1/0	a0002	865	145	23	33	69	2	17	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	a0003	865	1	0	1	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	a0004	865	1	1	0	0	0	0	copy fasta	ZNF624	chr17	16615734	16658850
ZNF625_chr19_12139890_12161734	1/1	a0001	372	280	70	62	99	12	35	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	a0002	372	92	26	14	43	4	5	copy fasta	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	a0003	372	2	0	0	0	0	2	copy fasta	ZNF625	chr19	12139890	12161734
ZNF626_chr19_20614939_20666571	0/1	a0000	0	292	52	54	136	12	37	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	1/0	a0001	528	56	18	4	23	1	9	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0002	528	22	16	5	0	1	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0003	472	2	0	0	2	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0004	387	2	1	1	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0005	528	2	0	0	0	0	2	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0006	528	1	0	0	1	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF626_chr19_20614939_20666571	0/0	a0007	528	1	1	0	0	0	0	copy fasta	ZNF626	chr19	20614939	20666571
ZNF627_chr19_11592483_11624161	1/1	a0001	461	316	82	68	116	12	36	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	a0002	461	2	2	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	a0003	106	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	a0004	461	1	1	0	0	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	a0005	461	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF627_chr19_11592483_11624161	0/0	a0006	461	1	0	0	1	0	0	copy fasta	ZNF627	chr19	11592483	11624161
ZNF628_chr19_55471617_55489487	0/1	a0001	1059	187	56	44	42	11	33	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	1/0	a0002	1059	99	5	12	73	3	5	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0003	1059	23	2	3	16	1	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0004	280	21	5	5	8	1	2	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0005	421	11	4	2	3	0	2	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0006	1059	9	0	0	8	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0007	1059	7	6	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0008	280	7	0	1	6	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0009	1059	6	6	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0010	1059	5	4	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0011	884	5	0	1	3	1	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0012	280	5	1	2	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0013	1059	4	4	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0014	421	4	0	0	3	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0015	421	3	1	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0016	421	3	0	0	2	1	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0017	1059	2	2	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0018	884	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0019	1059	2	0	0	2	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0020	884	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487