Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF628_chr19_55471617_55489487	0/0	a0021	421	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0022	884	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0023	1059	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0024	1059	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0025	1059	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0026	884	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0027	1059	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0028	1059	1	0	0	0	0	1	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0029	1059	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0030	884	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0031	426	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0032	421	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0033	885	1	0	1	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0034	885	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0035	426	1	1	0	0	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF628_chr19_55471617_55489487	0/0	a0036	885	1	0	0	1	0	0	copy fasta	ZNF628	chr19	55471617	55489487
ZNF629_chr16_30773456_30792205	1/1	a0001	869	273	76	63	91	10	31	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0002	869	3	3	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0003	869	3	0	0	2	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0004	869	2	2	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0005	869	1	0	1	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0006	869	1	1	0	0	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0007	869	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0008	869	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0009	869	1	0	0	0	0	1	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0010	869	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF629_chr16_30773456_30792205	0/0	a0011	869	1	0	0	1	0	0	copy fasta	ZNF629	chr16	30773456	30792205
ZNF630_chrX_48052516_48076640	1/0	a0001	657	253	58	39	115	9	31	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/1	a0002	657	7	0	4	0	1	1	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0003	657	4	4	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0004	657	3	0	0	3	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0005	657	3	3	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0006	657	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0007	657	2	2	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0008	657	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0009	657	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0010	657	1	0	1	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0011	657	1	1	0	0	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF630_chrX_48052516_48076640	0/0	a0012	33	1	0	0	1	0	0	copy fasta	ZNF630	chrX	48052516	48076640
ZNF638_chr2_71326782_71440061	1/1	a0001	1978	188	65	44	46	7	24	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0002	1978	78	1	17	46	3	11	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0003	1978	52	13	2	31	2	4	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0004	1978	7	0	0	6	0	1	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0005	1978	3	0	0	3	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0006	1978	2	0	0	2	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0007	1978	2	0	0	2	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0008	1978	2	2	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0009	1978	2	2	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0010	1978	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0011	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061