Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF773_chr19_57494938_57513229	0/0	a0004	442	2	1	1	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	a0005	442	2	0	0	2	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	a0006	442	1	1	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	a0007	442	1	0	0	1	0	0	copy fasta	ZNF773	chr19	57494938	57513229
ZNF774_chr15_90347284_90367847	0/0	a0001	483	202	32	40	107	6	17	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	1/1	a0002	483	99	16	22	34	6	19	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0003	483	56	19	4	30	1	2	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0004	483	37	15	6	11	3	2	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0005	483	9	8	1	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0006	483	7	1	2	4	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0007	483	2	1	1	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0008	483	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0009	483	1	0	0	0	0	1	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0010	483	1	0	0	0	0	1	copy fasta	ZNF774	chr15	90347284	90367847
ZNF774_chr15_90347284_90367847	0/0	a0011	483	1	1	0	0	0	0	copy fasta	ZNF774	chr15	90347284	90367847
ZNF775_chr7_150374330_150403630	1/0	a0001	537	224	69	48	69	9	28	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/1	a0002	537	157	20	23	92	5	16	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	a0003	372	10	0	3	5	0	2	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	a0004	537	4	4	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	a0005	372	1	1	0	0	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	a0006	537	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF775_chr7_150374330_150403630	0/0	a0007	541	1	0	0	1	0	0	copy fasta	ZNF775	chr7	150374330	150403630
ZNF776_chr19_57741815_57763148	1/1	a0001	518	411	92	81	178	18	40	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0002	518	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0003	518	1	0	1	0	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0004	476	1	0	0	0	0	1	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0005	518	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0006	518	1	0	0	0	0	1	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0007	546	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF776_chr19_57741815_57763148	0/0	a0008	518	1	0	0	1	0	0	copy fasta	ZNF776	chr19	57741815	57763148
ZNF777_chr7_149426363_149466062	0/1	a0001	831	228	32	40	129	8	18	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	1/0	a0002	831	125	33	28	40	8	15	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0003	831	41	6	1	22	0	12	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0004	831	19	6	5	4	1	3	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0005	831	12	11	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0006	831	5	5	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0007	831	2	1	1	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0008	831	1	0	0	1	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0009	831	1	0	0	0	1	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0010	831	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF777_chr7_149426363_149466062	0/0	a0011	831	1	1	0	0	0	0	copy fasta	ZNF777	chr7	149426363	149466062
ZNF778_chr16_89212703_89242141	0/1	a0001	757	233	27	52	117	18	18	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0002	757	52	20	0	29	0	3	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0003	757	40	0	4	34	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0004	757	28	0	8	13	0	7	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0005	757	26	18	0	2	0	6	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	1/0	a0006	757	20	13	1	3	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0007	757	8	7	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0008	757	5	0	0	0	0	5	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0009	757	3	0	3	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141