Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF80_chr3_114229631_114242578	0/0	a0006	273	3	3	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0007	244	1	0	0	1	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0008	273	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0009	273	1	0	1	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF80_chr3_114229631_114242578	0/0	a0010	273	1	1	0	0	0	0	copy fasta	ZNF80	chr3	114229631	114242578
ZNF813_chr19_53462733_53501255	1/1	a0001	617	129	13	27	66	8	13	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0002	617	88	40	12	25	1	10	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0003	617	54	8	8	35	0	3	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0004	617	52	17	8	20	3	4	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0005	617	47	0	6	40	0	1	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0006	617	45	9	13	7	2	14	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0007	617	5	0	0	5	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0008	617	2	0	1	0	0	1	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0009	617	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0010	617	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0011	617	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0012	617	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0013	617	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0014	99	1	0	0	1	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0015	617	1	1	0	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF813_chr19_53462733_53501255	0/0	a0016	617	1	0	1	0	0	0	copy fasta	ZNF813	chr19	53462733	53501255
ZNF814_chr19_57864381_57894037	0/1	a0001	856	416	86	77	199	12	41	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0002	856	5	0	4	0	1	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0003	856	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0004	855	3	3	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0005	799	2	2	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0006	800	2	0	1	1	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	1/0	a0007	855	1	0	0	0	0	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0008	855	1	0	0	0	0	1	copy fasta	ZNF814	chr19	57864381	57894037
ZNF814_chr19_57864381_57894037	0/0	a0009	856	1	0	0	0	1	0	copy fasta	ZNF814	chr19	57864381	57894037
ZNF816_chr19_52944385_52967881	1/1	a0001	651	179	10	36	100	8	23	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0002	652	87	27	8	50	0	2	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0003	652	76	30	15	9	8	14	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0004	652	48	6	5	34	1	2	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0005	652	19	6	1	11	1	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0006	652	6	5	1	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0007	624	5	5	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0008	652	4	0	0	4	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0009	652	3	3	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0010	652	3	3	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0011	540	2	0	0	2	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0012	652	2	2	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0013	652	2	0	2	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0014	603	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0015	651	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0016	652	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0017	652	1	0	0	1	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0018	220	1	1	0	0	0	0	copy fasta	ZNF816	chr19	52944385	52967881
ZNF816_chr19_52944385_52967881	0/0	a0019	652	1	0	0	0	0	1	copy fasta	ZNF816	chr19	52944385	52967881
ZNF81_chrX_47831902_47930627	1/1	a0001	661	207	51	33	89	6	26	copy fasta	ZNF81	chrX	47831902	47930627