Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF839_chr14_102314746_102347367	0/0	a0012	927	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0013	927	1	0	0	0	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0014	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0015	927	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0016	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0017	927	1	0	1	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0018	927	1	0	0	0	0	1	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0019	927	1	0	0	1	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0020	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0021	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0022	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0023	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0024	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0025	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF83_chr19_52607377_52643355	0/0	a0001	488	137	22	20	86	3	6	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0002	516	127	38	20	47	5	17	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	1/1	a0003	516	120	9	32	48	5	24	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0004	516	38	14	3	17	2	2	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0005	488	8	7	1	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0006	488	7	0	0	7	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0007	488	4	0	4	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0008	335	3	3	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0009	262	2	0	2	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0010	516	2	2	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0011	516	2	2	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0012	488	2	0	0	2	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0013	516	1	0	0	0	0	1	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0014	516	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0015	516	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0016	516	1	0	0	0	1	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0017	516	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0018	516	1	1	0	0	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0019	383	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF83_chr19_52607377_52643355	0/0	a0020	17	1	0	0	1	0	0	copy fasta	ZNF83	chr19	52607377	52643355
ZNF841_chr19_52059465_52100765	1/1	a0001	924	250	44	43	115	15	31	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0002	924	65	18	12	23	1	11	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0003	924	27	21	5	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0004	924	17	0	0	17	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0005	924	4	4	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0006	924	2	2	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0007	924	1	0	0	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0008	924	1	0	0	1	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	a0009	924	1	1	0	0	0	0	copy fasta	ZNF841	chr19	52059465	52100765
ZNF843_chr16_31430434_31447789	0/0	a0000	0	3	1	0	2	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	1/1	a0001	348	377	62	69	187	16	41	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	a0002	348	24	23	1	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	a0003	348	7	7	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	a0004	348	1	0	0	0	0	1	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	a0005	348	1	0	0	1	0	0	copy fasta	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	a0006	348	1	1	0	0	0	0	copy fasta	ZNF843	chr16	31430434	31447789