JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C19orf47_chr19_40314536_40353397	0/0	a0008	385	1	0	0	0	0	1	copy fasta	C19orf47	chr19	40314536	40353397
C19orf53_chr19_13769456_13783773	1/1	a0001	99	263	65	50	106	14	26	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	a0002	99	170	31	30	90	2	17	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	a0003	99	1	0	0	0	0	1	copy fasta	C19orf53	chr19	13769456	13783773
C19orf67_chr19_14076624_14090783	1/1	a0001	358	381	84	73	160	12	50	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	a0002	358	7	7	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	a0003	358	3	2	1	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	a0004	358	3	3	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf73_chr19_49113402_49124143	0/1	a0001	129	243	70	46	81	15	30	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	1/0	a0002	129	126	18	24	66	1	16	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	a0003	129	2	1	1	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	a0004	129	1	0	1	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	a0005	129	1	1	0	0	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	a0006	129	1	0	0	1	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf81_chr19_50644445_50664306	0/1	a0001	198	345	87	70	132	15	40	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	1/0	a0002	198	66	12	11	35	2	5	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	a0003	198	1	0	0	0	1	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	a0004	198	1	0	1	0	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	a0005	198	1	0	0	0	0	1	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	a0006	198	1	1	0	0	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	a0007	198	1	0	0	1	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf84_chr19_51383289_51395591	1/1	a0001	186	292	51	67	120	14	38	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	a0002	186	151	48	21	70	4	8	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	a0003	186	1	0	0	1	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	a0004	186	1	0	0	1	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	a0005	186	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf85_chr19_55458001_55469751	1/0	a0001	222	384	87	68	167	16	45	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	a0002	222	9	1	4	0	2	2	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	a0003	222	3	3	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	a0004	222	2	2	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/1	a0005	222	2	0	0	1	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	a0006	222	1	1	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	a0007	222	1	0	0	0	0	1	copy fasta	C19orf85	chr19	55458001	55469751
C1D_chr2_68036130_68068004	1/1	a0001	141	241	46	69	82	15	27	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	a0002	141	126	44	9	55	1	17	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	a0003	141	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1GALT1C1L_chr2_43670151_43681429	1/1	a0001	315	352	67	70	159	11	43	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0002	315	18	18	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0003	315	13	2	3	5	0	3	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0004	315	6	2	3	0	1	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0005	315	2	2	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0006	315	2	0	0	0	0	2	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0007	315	1	0	0	0	0	1	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0008	315	1	1	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	a0009	315	1	0	0	0	0	1	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1_chrX_120620674_120635054	1/0	a0001	318	278	68	39	144	9	17	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	a0002	318	40	0	9	13	3	15	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	a0003	318	4	0	0	4	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/1	a0004	318	2	0	0	0	1	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1_chr7_7177544_7253616	1/1	a0001	363	385	94	62	183	12	32	copy fasta	C1GALT1	chr7	7177544	7253616