Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF878_chr19_12038805_12057961	0/0	a0006	531	1	0	0	0	0	1	copy fasta	ZNF878	chr19	12038805	12057961
ZNF879_chr5_179018804_179040064	1/1	a0001	563	284	49	49	136	11	37	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0002	563	167	42	31	80	5	9	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0003	563	1	0	0	0	0	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0004	563	1	0	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0005	563	1	0	0	1	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0006	563	1	0	0	0	0	1	copy fasta	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	a0007	563	1	1	0	0	0	0	copy fasta	ZNF879	chr5	179018804	179040064
ZNF880_chr19_52364923_52390795	1/0	a0001	577	200	34	41	99	8	17	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0002	109	137	14	30	65	5	23	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0003	577	68	17	7	40	2	2	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0004	433	15	0	0	14	0	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0005	109	12	11	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/1	a0006	577	8	0	3	0	3	1	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0007	433	4	3	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0008	433	4	4	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0009	577	3	3	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0010	577	2	0	2	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0011	577	1	0	1	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0012	434	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0013	577	1	1	0	0	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0014	433	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF880_chr19_52364923_52390795	0/0	a0015	577	1	0	0	1	0	0	copy fasta	ZNF880	chr19	52364923	52390795
ZNF883_chr9_112983129_113017192	1/1	a0001	379	432	85	80	213	15	37	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	a0002	340	6	0	0	0	1	5	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	a0003	379	4	4	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	a0004	379	2	0	0	2	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	a0005	379	1	1	0	0	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF883_chr9_112983129_113017192	0/0	a0006	379	1	0	0	1	0	0	copy fasta	ZNF883	chr9	112983129	113017192
ZNF888_chr19_52899415_52928428	1/1	a0001	718	221	20	46	111	14	28	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0002	718	180	63	32	65	2	18	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0003	718	8	7	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0004	717	4	4	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0005	718	2	2	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0006	718	2	0	0	0	2	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0007	718	2	0	2	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0008	718	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0009	717	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0010	718	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0011	718	1	1	0	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0012	718	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0013	718	1	0	0	0	0	1	copy fasta	ZNF888	chr19	52899415	52928428
ZNF888_chr19_52899415_52928428	0/0	a0014	718	1	0	1	0	0	0	copy fasta	ZNF888	chr19	52899415	52928428
ZNF891_chr12_133099779_133135274	1/1	a0001	544	296	67	66	121	9	31	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0002	544	49	1	8	21	7	12	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0003	544	25	22	2	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0004	11	7	4	3	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0005	544	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0006	544	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0007	544	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274