Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF891_chr12_133099779_133135274	0/0	a0008	544	1	0	1	0	0	0	copy fasta	ZNF891	chr12	133099779	133135274
ZNF891_chr12_133099779_133135274	0/0	a0009	544	1	0	0	0	0	1	copy fasta	ZNF891	chr12	133099779	133135274
ZNF892_chr2_95202521_95228839	1/1	a0001	522	324	75	58	142	10	37	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	a0002	522	3	0	0	0	0	3	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	a0003	522	2	2	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	a0004	522	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	a0005	522	1	1	0	0	0	0	copy fasta	ZNF892	chr2	95202521	95228839
ZNF892_chr2_95202521_95228839	0/0	a0006	522	1	0	0	0	0	1	copy fasta	ZNF892	chr2	95202521	95228839
ZNF8_chr19_58273955_58307791	1/1	a0001	575	424	96	78	185	18	45	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0002	575	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0003	575	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0004	575	1	0	0	0	0	1	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0005	575	1	1	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0006	575	1	0	0	1	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF8_chr19_58273955_58307791	0/0	a0007	575	1	1	0	0	0	0	copy fasta	ZNF8	chr19	58273955	58307791
ZNF90_chr19_20073000_20126165	1/1	a0001	601	144	38	38	23	13	30	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0002	601	135	13	14	101	0	7	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0003	601	71	0	13	54	1	3	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0004	601	37	34	3	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0005	601	6	6	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0006	601	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0007	601	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0008	601	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0009	601	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0010	601	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0011	601	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0012	629	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0013	629	1	0	0	1	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF90_chr19_20073000_20126165	0/0	a0014	601	1	1	0	0	0	0	copy fasta	ZNF90	chr19	20073000	20126165
ZNF91_chr19_23352696_23400471	1/1	a0001	1191	187	27	36	92	10	20	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0002	1191	49	14	14	9	6	6	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0003	1191	47	9	1	35	0	2	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0004	1191	38	11	4	17	0	6	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0005	1191	26	24	2	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0006	1191	6	3	3	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0007	1191	2	0	2	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0008	1191	2	0	0	2	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0009	1191	2	2	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0010	1191	1	0	0	1	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0011	1191	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0012	1191	1	0	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0013	1191	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0014	1191	1	0	1	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0015	1191	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF91_chr19_23352696_23400471	0/0	a0016	1191	1	1	0	0	0	0	copy fasta	ZNF91	chr19	23352696	23400471
ZNF92_chr7_65368855_65406136	1/1	a0001	586	259	26	45	142	11	33	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	a0002	586	137	54	24	52	1	6	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	a0003	586	7	6	1	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	a0004	586	4	4	0	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136
ZNF92_chr7_65368855_65406136	0/0	a0005	586	2	0	2	0	0	0	copy fasta	ZNF92	chr7	65368855	65406136