Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSCAN16_chr6_28119609_28135082	0/0	a0005	348	1	0	1	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN18_chr19_58078856_58103231	1/0	a0001	510	358	77	60	166	14	40	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/1	a0002	510	86	10	21	41	4	9	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0003	510	4	4	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0004	510	4	4	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0005	510	2	0	0	2	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0006	510	2	2	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0007	510	1	0	0	1	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0008	510	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0009	510	1	0	1	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0010	510	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0011	510	1	1	0	0	0	0	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	a0012	510	1	0	0	0	0	1	copy fasta	ZSCAN18	chr19	58078856	58103231
ZSCAN1_chr19_58029025_58059631	1/1	a0001	408	375	90	76	157	10	40	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	a0002	408	2	0	0	0	0	2	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	a0003	408	1	1	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	a0004	408	1	0	0	1	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN1_chr19_58029025_58059631	0/0	a0005	408	1	1	0	0	0	0	copy fasta	ZSCAN1	chr19	58029025	58059631
ZSCAN20_chr1_33467645_33506643	0/1	a0001	1043	397	78	63	195	17	43	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0002	1043	7	7	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0003	1043	4	0	3	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0004	1043	3	3	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0005	1043	2	0	0	2	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0006	1043	2	0	0	1	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0007	1043	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0008	1043	1	0	0	0	0	1	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0009	1043	1	1	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0010	1043	1	0	0	0	1	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0011	1043	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	1/0	a0012	1043	1	0	0	0	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	a0013	1043	1	0	0	1	0	0	copy fasta	ZSCAN20	chr1	33467645	33506643
ZSCAN21_chr7_100044774_100070040	1/1	a0001	473	387	86	70	171	14	44	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	a0002	473	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	a0003	473	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	a0004	473	1	0	0	1	0	0	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	a0005	473	1	0	0	0	0	1	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	a0006	473	1	0	0	0	0	1	copy fasta	ZSCAN21	chr7	100044774	100070040
ZSCAN22_chr19_58321994_58347332	1/1	a0001	491	378	78	81	161	18	38	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0002	491	6	6	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0003	491	5	2	3	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0004	491	3	3	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0005	491	3	0	0	0	0	3	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0006	491	1	1	0	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0007	491	1	0	0	0	0	1	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0008	491	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0009	491	1	0	1	0	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	a0010	491	1	0	0	1	0	0	copy fasta	ZSCAN22	chr19	58321994	58347332
ZSCAN23_chr6_28427655_28448491	1/1	a0001	389	429	93	74	204	14	42	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	a0002	389	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	a0003	389	1	0	0	1	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491