Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSCAN32_chr16_3377085_3406004	0/0	a0005	697	2	2	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0006	697	2	2	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0007	697	2	0	2	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0008	697	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0009	697	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0010	697	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0011	697	1	1	0	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0012	697	1	0	0	0	0	1	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0013	697	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0014	697	1	0	0	1	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN4_chr19_57663935_57684152	1/1	a0001	433	412	82	77	198	14	39	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	a0002	433	10	9	1	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	a0003	433	2	0	2	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	a0004	433	1	0	0	0	0	1	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	a0005	433	1	1	0	0	0	0	copy fasta	ZSCAN4	chr19	57663935	57684152
ZSCAN5A_chr19_56216303_56319839	1/1	a0001	496	297	80	61	111	6	37	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0002	496	54	5	16	23	6	4	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0003	496	5	5	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0004	496	3	3	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0005	496	1	0	1	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0006	496	1	1	0	0	0	0	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	a0007	496	1	0	0	0	0	1	copy fasta	ZSCAN5A	chr19	56216303	56319839
ZSCAN5B_chr19_56184686_56202783	1/0	a0001	495	136	18	32	64	5	16	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0002	495	113	35	17	41	9	11	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/1	a0003	495	93	2	18	58	1	13	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0004	495	55	1	11	42	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0005	495	17	0	0	17	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0006	495	7	6	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0007	495	7	6	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0008	495	6	6	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0009	495	6	6	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0010	495	4	0	0	0	0	4	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0011	495	3	0	0	3	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0012	495	3	3	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0013	495	2	1	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0014	495	2	1	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0015	495	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0016	495	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0017	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0018	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0019	495	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0020	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0021	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0022	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0023	495	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0024	495	1	0	0	1	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0025	495	1	0	1	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0026	495	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0027	495	1	0	0	0	1	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0028	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783