Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSWIM1_chr20_45876227_45890266	0/0	a0002	485	16	1	0	9	1	5	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	a0003	8	5	0	1	3	0	1	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	a0004	485	1	1	0	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	a0005	485	1	0	1	0	0	0	copy fasta	ZSWIM1	chr20	45876227	45890266
ZSWIM2_chr2_186822475_186854170	1/1	a0001	633	253	48	55	109	12	27	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0002	633	52	29	8	9	2	4	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0003	633	4	4	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0004	633	3	3	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0005	633	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0006	633	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0007	633	2	2	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0008	633	2	0	0	0	0	2	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0009	633	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0010	633	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0011	633	1	0	0	1	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0012	633	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0013	633	1	1	0	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0014	633	1	0	1	0	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0015	633	1	0	0	0	0	1	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	a0016	633	1	0	0	1	0	0	copy fasta	ZSWIM2	chr2	186822475	186854170
ZSWIM3_chr20_45852614_45884122	0/1	a0001	696	205	40	32	105	7	20	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	1/0	a0002	696	167	51	21	75	3	16	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0003	696	7	6	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0004	696	3	0	0	3	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0005	696	1	0	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0006	696	1	0	0	1	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0007	696	1	1	0	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	a0008	696	1	0	1	0	0	0	copy fasta	ZSWIM3	chr20	45852614	45884122
ZSWIM4_chr19_13790443_13837254	1/1	a0001	1106	281	58	61	124	7	29	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0002	1106	42	13	4	15	4	6	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0003	1106	11	11	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0004	1106	6	6	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0005	1106	3	3	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0006	1106	2	2	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0007	1106	2	0	1	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0008	1106	1	1	0	0	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0009	1106	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0010	1106	1	0	0	0	1	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0011	1106	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0012	1106	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0013	1106	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0014	1106	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0015	1106	1	0	0	1	0	0	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM4_chr19_13790443_13837254	0/0	a0016	1106	1	0	0	0	0	1	copy fasta	ZSWIM4	chr19	13790443	13837254
ZSWIM5_chr1_45011399_45211605	1/1	a0001	1185	208	71	42	69	9	15	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	a0002	1185	22	0	10	9	2	1	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	a0003	1185	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	a0004	1185	1	0	0	1	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	a0005	1185	1	1	0	0	0	0	copy fasta	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	a0006	1185	1	0	0	0	1	0	copy fasta	ZSWIM5	chr1	45011399	45211605