JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2orf81_chr2_74409177_74426619	0/0	a0013	615	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf88_chr2_190175863_190208484	1/1	a0001	95	234	40	42	105	13	32	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	a0002	95	184	55	20	92	5	12	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	a0003	95	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	a0004	95	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf92_chr2_97664713_97708066	1/1	a0001	265	172	65	31	52	3	19	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0002	265	86	9	23	41	5	8	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0003	265	29	1	2	23	0	3	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0004	258	14	12	2	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0005	265	3	3	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0006	258	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0007	265	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0008	265	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0009	254	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0010	265	1	0	0	1	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	a0011	264	1	0	0	1	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C3AR1_chr12_8051844_8071359	1/1	a0001	482	409	92	77	183	11	44	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0002	482	8	0	5	0	3	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0003	482	2	2	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0004	482	1	0	1	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0005	482	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0006	482	1	0	1	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0007	482	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	a0008	482	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3_chr19_6672704_6725650	1/1	a0001	1663	331	79	59	136	11	44	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0002	1663	15	1	9	0	2	3	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0003	1663	7	2	2	0	0	3	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0004	1663	4	4	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0005	1663	2	0	0	2	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0006	1663	1	0	0	0	1	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0007	1663	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0008	1663	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0009	1663	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0010	1663	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0011	1663	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0012	1663	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0013	1663	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0014	1663	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0015	1663	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	a0016	1663	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3orf14_chr3_62314022_62341213	1/1	a0001	128	380	96	71	162	10	39	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	a0002	128	7	0	1	0	0	6	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	a0003	128	1	0	0	0	0	1	copy fasta	C3orf14	chr3	62314022	62341213
C3orf18_chr3_50553025_50572747	0/0	a0001	162	319	56	64	153	11	35	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	1/1	a0002	162	62	30	10	14	3	3	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	a0003	162	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf20_chr3_14670141_14778036	1/1	a0001	904	168	51	29	68	3	15	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0002	904	60	13	14	21	5	7	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0003	904	49	11	13	18	2	5	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0004	904	25	0	0	24	1	0	copy fasta	C3orf20	chr3	14670141	14778036