JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CA8_chr8_60180412_60286400	0/0	a0002	290	3	3	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA9_chr9_35668928_35686159	1/0	a0001	459	226	75	41	83	7	19	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/1	a0002	459	165	8	32	90	8	26	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0003	453	27	2	1	21	0	3	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0004	459	13	1	4	6	1	1	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0005	453	8	8	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0006	459	2	0	2	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0007	459	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0008	459	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0009	453	1	1	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0010	459	1	1	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	a0011	459	1	0	0	0	0	1	copy fasta	CA9	chr9	35668928	35686159
CAAP1_chr9_26835685_26897802	1/1	a0001	361	344	64	68	155	18	37	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0002	361	20	18	2	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0003	361	3	3	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0004	361	2	0	0	0	0	2	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0005	361	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0006	312	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	a0007	361	1	1	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAB39L_chr13_49303650_49449064	1/1	a0001	337	323	84	68	115	10	44	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	a0002	288	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39_chr2_230707842_230826075	1/1	a0001	341	340	84	68	142	14	30	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	a0002	341	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	a0003	341	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CABCOCO1_chr10_61657929_61771766	0/1	a0001	301	367	82	66	161	16	41	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	1/0	a0002	296	4	3	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	a0003	301	1	0	0	1	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	a0004	301	1	1	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	a0005	301	1	0	0	0	0	1	copy fasta	CABCOCO1	chr10	61657929	61771766
CABIN1_chr22_24006304_24183628	1/1	a0001	2220	199	57	18	98	5	19	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0002	2220	33	1	1	26	1	4	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0003	2220	13	7	6	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0004	2220	5	0	0	5	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0005	2220	3	3	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0006	2220	3	0	0	3	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0007	2220	3	2	1	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0008	2220	2	2	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0009	2220	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0010	2220	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0011	1515	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0012	2220	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0013	2220	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0014	2220	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	a0015	2220	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABLES1_chr18_23130485_23265470	1/0	a0001	633	209	58	45	80	5	20	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/1	a0002	630	59	15	6	27	2	8	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	a0003	633	3	3	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	a0004	633	2	0	2	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	a0005	633	2	1	0	0	1	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	a0006	630	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470