JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA1E_chr1_181478517_181813084	0/0	a0009	2313	1	0	0	0	1	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0010	2313	1	0	0	1	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0011	2313	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	a0012	2313	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1F_chrX_49200063_49238340	1/1	a0001	1966	201	41	42	81	11	24	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0002	1966	39	0	2	29	0	8	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0003	1967	23	19	4	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0004	1967	12	11	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0005	201	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0006	297	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0007	1966	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0008	1966	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0009	1966	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0010	1966	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0011	1966	1	1	0	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0012	1966	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0013	1965	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0014	1054	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0015	1966	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0016	1966	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0017	1966	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0018	135	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	a0019	44	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1G_chr17_50555715_50632474	1/1	a0001	2377	221	76	50	42	15	36	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0002	2377	9	8	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0003	2377	3	3	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0004	2377	2	2	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0005	2377	2	0	2	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0006	2377	2	0	0	2	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0007	2377	1	0	0	0	1	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0008	2377	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0009	2377	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0010	2377	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0011	2377	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0012	2377	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	a0013	2377	1	0	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1H_chr16_1148106_1226768	0/0	a0001	2353	102	9	23	61	3	6	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0002	2353	73	38	10	14	6	5	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0003	2353	12	9	1	1	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0004	2353	11	0	0	11	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0005	2353	10	2	3	0	1	4	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0006	2353	9	0	2	5	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/1	a0007	2353	9	0	5	0	0	3	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	1/0	a0008	2353	9	4	1	0	1	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0009	2353	7	0	0	0	1	6	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0010	2353	4	4	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0011	2353	4	0	2	1	1	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0012	2353	4	0	1	2	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0013	2353	3	0	0	1	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	a0014	2353	3	0	0	3	0	0	copy fasta	CACNA1H	chr16	1148106	1226768