JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACNA2D4_chr12_1786963_1923652	0/0	a0015	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0016	1137	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0017	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0018	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0019	1137	1	0	0	1	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	a0020	1137	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNB1_chr17_39168453_39202669	1/1	a0001	598	395	96	66	173	18	40	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	a0002	598	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB2_chr10_18135424_18548557	0/0	a0001	660	188	79	43	48	4	14	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	a0002	660	12	5	5	0	2	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18335709_18548557	1/1	a0001	606	284	81	55	108	6	32	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	a0002	606	16	5	6	0	4	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	a0003	606	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	a0004	606	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB3_chr12_48813496_48833941	1/1	a0001	484	361	89	70	148	16	36	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	a0002	484	2	0	0	2	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	a0003	484	1	1	0	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB4_chr2_151827771_152104044	0/0	a0001	520	229	75	36	82	8	28	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	a0002	520	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNG1_chr17_67039554_67061797	1/1	a0001	222	387	89	68	173	10	45	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	a0002	222	35	1	14	16	2	2	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	a0003	222	4	4	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	a0004	222	1	0	0	1	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	a0005	222	1	0	0	0	0	1	copy fasta	CACNG1	chr17	67039554	67061797
CACNG2_chr22_36555857_36708752	1/1	a0001	323	214	76	46	58	8	24	copy fasta	CACNG2	chr22	36555857	36708752
CACNG3_chr16_24251335_24367412	1/1	a0001	315	366	90	68	150	14	42	copy fasta	CACNG3	chr16	24251335	24367412
CACNG4_chr17_66959707_67038398	1/1	a0001	327	349	91	74	136	8	38	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	a0002	327	3	3	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG5_chr17_66830117_66899751	1/1	a0001	275	368	90	74	144	16	42	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	a0002	275	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	a0003	275	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	a0004	275	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	a0005	275	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG6_chr19_53986637_54017666	1/1	a0001	260	410	86	75	190	14	43	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0002	260	9	0	7	0	2	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0003	260	4	4	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0004	260	3	3	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0005	260	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0006	260	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0007	260	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	a0008	254	1	0	0	0	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG7_chr19_53904278_53948950	0/0	a0001	275	364	94	70	142	18	40	copy fasta	CACNG7	chr19	53904278	53948950
CACNG8_chr19_53957937_53995215	1/1	a0001	391	393	98	78	157	18	40	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	a0002	391	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACTIN_chr19_3605645_3631790	1/0	a0001	758	226	56	15	118	6	30	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/1	a0002	758	160	37	42	61	7	12	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	a0003	758	14	0	11	0	3	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	a0004	758	2	0	2	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	a0005	758	2	0	0	2	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	a0006	758	2	2	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790