JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CACTIN_chr19_3605645_3631790	0/0	a0007	758	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	a0008	758	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACUL1_chr10_118671411_118759970	1/1	a0001	369	387	90	62	178	14	41	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	a0002	369	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970
CACYBP_chr1_174994947_175017027	1/1	a0001	228	412	92	76	186	18	38	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	a0002	228	4	4	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CADM1_chr11_115164236_115509415	0/0	a0001	471	162	66	35	40	1	20	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	a0002	471	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	a0003	471	1	0	0	0	1	0	copy fasta	CADM1	chr11	115164236	115509415
CADM2_chr3_84953989_86079429	0/0	a0001	404	145	60	20	32	10	23	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	a0002	404	1	0	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM3_chr1_159166615_159208313	1/1	a0001	398	373	78	70	176	15	32	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	a0002	398	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	a0003	398	1	0	0	0	1	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	a0004	398	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM4_chr19_43617368_43644850	1/1	a0001	388	418	85	73	200	16	42	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	a0002	388	3	1	1	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	a0003	388	2	2	0	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	a0004	388	1	0	0	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADPS2_chr7_122313411_122891460	1/1	a0001	1296	122	50	26	20	6	18	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	a0002	1296	2	2	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	a0003	1296	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	a0004	1296	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS_chr3_62393348_62880416	1/1	a0001	1353	158	69	37	26	8	16	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	a0002	1353	1	0	1	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	a0003	1353	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CAD_chr2_27212369_27248943	1/1	a0001	2225	252	78	65	62	12	33	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	a0002	2225	2	2	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	a0003	2225	1	0	1	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	a0004	2225	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	a0005	2225	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	a0006	2225	1	0	0	0	0	1	copy fasta	CAD	chr2	27212369	27248943
CAGE1_chr6_7321659_7394742	1/1	a0001	839	306	64	58	146	6	30	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0002	839	29	2	5	20	2	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0003	839	16	15	1	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0004	839	5	5	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0005	839	1	1	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0006	839	1	1	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0007	839	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	a0008	839	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CALB1_chr8_90053608_90087879	1/1	a0001	261	384	88	60	188	14	32	copy fasta	CALB1	chr8	90053608	90087879
CALB2_chr16_71353723_71395433	1/1	a0001	271	383	79	65	185	12	40	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	a0002	271	42	15	11	8	2	6	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	a0003	271	1	0	0	1	0	0	copy fasta	CALB2	chr16	71353723	71395433
CALCA_chr11_14963501_14977351	1/1	a0001	141	362	81	56	167	14	42	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	a0002	141	16	9	2	5	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	a0003	141	2	0	0	2	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	a0004	141	1	0	1	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	a0005	141	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	a0006	141	1	0	1	0	0	0	copy fasta	CALCA	chr11	14963501	14977351