JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CAMK2G_chr10_73807501_73879555	0/0	a0002	588	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	a0003	588	1	0	1	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2N1_chr1_20477391_20491210	1/1	a0001	78	422	86	76	192	18	48	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N2_chr3_184254213_184266553	1/1	a0001	79	380	92	66	164	16	40	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK4_chr5_111219384_111499886	1/1	a0001	473	239	83	38	76	10	30	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	a0002	473	6	4	2	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	a0003	473	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMKK1_chr17_3855315_3898053	1/0	a0001	505	261	89	36	100	14	21	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/1	a0002	505	179	7	47	95	2	27	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	a0003	505	2	0	0	0	0	2	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	a0004	505	1	0	0	1	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	a0005	505	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	a0006	505	1	0	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	a0007	505	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK2_chr12_121232692_121301709	1/1	a0001	588	137	31	23	56	5	20	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0002	588	111	34	21	42	4	10	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0003	588	53	4	17	22	2	8	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0004	588	21	13	0	7	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0005	588	5	1	1	0	3	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0006	588	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0007	588	1	0	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	a0008	588	1	0	0	1	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKMT_chr2_44356947_44777592	0/0	a0001	323	198	82	30	62	2	22	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKV_chr3_49852989_49874906	1/1	a0001	501	338	94	70	116	14	42	copy fasta	CAMKV	chr3	49852989	49874906
CAMLG_chr5_134733548_134757157	0/0	a0001	296	276	87	51	98	10	30	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	a0002	296	86	1	13	66	2	4	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	a0003	296	3	0	0	3	0	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	a0004	296	1	0	0	1	0	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMP_chr3_48218495_48230485	1/1	a0001	170	338	77	73	133	16	37	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0002	170	2	0	0	0	0	2	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0003	170	2	0	0	2	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0004	17	1	1	0	0	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0005	170	1	0	0	0	0	1	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0006	170	1	0	1	0	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	a0007	170	1	0	0	1	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMSAP1_chr9_135803487_135912546	1/1	a0001	1602	318	82	57	126	13	38	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0002	1602	7	0	0	7	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0003	1602	7	1	4	0	1	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0004	1602	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0005	1606	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0006	1602	1	0	0	0	1	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0007	1602	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0008	1602	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0009	1602	1	0	0	1	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0010	1602	1	0	0	0	1	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	a0011	1602	1	0	0	0	0	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP2_chr1_200733893_200865704	1/1	a0001	1478	352	76	68	159	14	33	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0002	1478	4	0	0	4	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0003	1478	3	1	1	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	a0004	1478	3	3	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704