Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACR_chr22_50733204_50750339	1/1	a0002	421	105	28	23	37	8	7	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0003	421	24	9	2	6	4	3	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0004	418	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0005	421	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0006	419	4	0	0	4	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0007	421	1	0	0	0	0	1	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0008	421	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0009	421	1	0	1	0	0	0	copy fasta	ACR	chr22	50733204	50750339
ACR_chr22_50733204_50750339	0/0	a0010	421	1	0	0	1	0	0	copy fasta	ACR	chr22	50733204	50750339
ACSBG1_chr15_78162468_78239565	1/0	a0001	724	165	26	29	84	6	19	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/1	a0002	724	152	47	31	49	4	20	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0003	724	26	12	2	12	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0004	724	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0005	724	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0006	724	1	0	0	0	0	1	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0007	724	1	1	0	0	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0008	724	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0009	724	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG1_chr15_78162468_78239565	0/0	a0010	724	1	0	0	1	0	0	copy fasta	ACSBG1	chr15	78162468	78239565
ACSBG2_chr19_6130667_6198091	0/1	a0001	666	124	36	25	40	8	14	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	1/0	a0002	666	76	19	15	31	1	9	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0003	666	20	12	1	6	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0004	666	12	2	2	6	0	2	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0005	666	6	6	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0006	666	6	0	3	0	3	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0007	666	3	3	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0008	666	2	0	0	2	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0009	666	2	2	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0010	666	2	0	0	2	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0011	666	2	2	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0012	666	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0013	666	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0014	666	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0015	666	1	0	0	1	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0016	666	1	0	0	0	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0017	666	1	1	0	0	0	0	copy fasta	ACSBG2	chr19	6130667	6198091
ACSBG2_chr19_6130667_6198091	0/0	a0018	666	1	0	0	0	0	1	copy fasta	ACSBG2	chr19	6130667	6198091
ACSF2_chr17_50421218_50479837	1/1	a0001	615	292	66	67	109	14	34	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0002	615	12	8	4	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0003	615	8	5	3	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0004	615	4	4	0	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0005	615	2	0	0	2	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0006	615	1	0	0	1	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF2_chr17_50421218_50479837	0/0	a0007	615	1	1	0	0	0	0	copy fasta	ACSF2	chr17	50421218	50479837
ACSF3_chr16_89088852_89161233	0/0	a0001	576	177	55	50	49	10	13	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	1/1	a0002	576	106	25	14	43	4	18	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0003	576	35	3	3	23	1	5	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0004	576	34	0	0	30	0	4	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0005	576	6	3	1	0	1	1	copy fasta	ACSF3	chr16	89088852	89161233
ACSF3_chr16_89088852_89161233	0/0	a0006	576	3	0	0	3	0	0	copy fasta	ACSF3	chr16	89088852	89161233