JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CETN3_chr5_90387257_90414756	0/1	a0002	167	63	6	10	32	3	11	copy fasta	CETN3	chr5	90387257	90414756
CETP_chr16_56956950_56988845	0/1	a0001	493	211	29	42	97	13	29	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	1/0	a0002	493	209	56	26	108	3	15	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0003	493	12	0	11	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0004	493	6	6	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0005	493	5	0	0	5	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0006	493	3	0	1	0	0	2	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0007	493	3	3	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0008	493	3	2	1	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0009	493	2	0	0	0	0	2	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0010	493	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0011	493	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0012	493	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0013	493	1	0	0	0	0	1	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0014	493	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0015	493	1	0	1	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0016	493	1	0	0	1	0	0	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	a0017	493	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CFAP100_chr3_126389909_126441556	1/0	a0001	611	361	70	71	162	15	42	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0002	611	18	1	0	16	0	1	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0003	610	11	0	6	1	1	3	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0004	611	7	7	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0005	611	6	6	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0006	611	3	3	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0007	611	3	1	2	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0008	611	2	0	0	2	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0009	611	2	2	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0010	611	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0011	611	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/1	a0012	611	1	0	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0013	611	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0014	611	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0015	611	1	1	0	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0016	611	1	0	1	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0017	611	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	a0018	611	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP107_chr1_12741200_12768699	1/0	a0001	194	249	67	43	94	13	31	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/1	a0002	194	68	7	15	32	4	9	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0003	194	5	4	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0004	194	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0005	194	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0006	194	2	1	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0007	33	1	0	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	a0008	13	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP119_chr16_30752423_30767062	1/1	a0001	331	262	76	61	82	16	25	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	a0002	331	2	1	1	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	a0003	331	1	0	0	0	0	1	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	a0004	331	1	1	0	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP126_chr1_161359733_161372876	1/1	a0001	177	346	86	58	146	14	40	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	a0002	177	2	0	0	2	0	0	copy fasta	CFAP126	chr1	161359733	161372876