JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP210_chr2_169640425_169699405	0/0	a0004	552	12	10	2	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0005	552	5	1	0	0	1	3	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0006	552	4	4	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0007	550	3	3	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0008	552	2	2	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0009	552	2	0	0	2	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0010	552	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0011	552	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0012	552	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0013	552	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0014	552	1	0	0	1	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	a0015	552	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP221_chr2_119539449_119661661	0/0	a0001	840	110	31	18	50	1	10	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/1	a0002	840	47	18	14	10	1	3	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0003	840	38	6	7	19	0	6	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0004	840	11	9	0	2	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0005	840	10	7	1	1	0	1	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0006	840	3	3	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	1/0	a0007	840	2	1	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0008	840	2	1	1	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0009	840	1	0	0	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0010	840	1	0	0	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	a0011	840	1	0	1	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP251_chr12_121913592_122008919	0/0	a0001	1154	108	0	27	61	7	13	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0002	1154	50	6	0	39	0	5	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/1	a0003	1154	50	16	16	6	5	6	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	1/0	a0004	1149	48	6	14	20	2	5	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0005	1154	34	12	2	11	0	9	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0006	1154	34	31	3	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0007	1154	17	0	3	11	0	3	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0008	1154	4	3	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0009	1154	2	0	0	2	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0010	323	1	0	0	1	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0011	1161	1	0	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0012	1154	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0013	1154	1	0	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0014	1154	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0015	1149	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	a0016	1149	1	0	0	1	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP276_chr1_109100951_109117747	1/1	a0001	169	376	82	70	171	16	35	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0002	169	8	8	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0003	169	7	1	4	0	1	1	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0004	169	5	5	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0005	46	5	2	2	0	1	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0006	60	1	1	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0007	169	1	1	0	0	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	a0008	169	1	0	0	1	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP298_chr21_32594354_32617377	1/1	a0001	290	411	94	72	185	18	40	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	a0002	290	1	0	1	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	a0003	290	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377