JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP74_chr1_1916957_2008786	0/0	a0051	1640	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0052	1644	1	0	0	0	0	1	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0053	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0054	1640	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0055	1640	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0056	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0057	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0058	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0059	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0060	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0061	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0062	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0063	1639	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0064	1639	1	1	0	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0065	1639	1	0	0	1	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP74_chr1_1916957_2008786	0/0	a0066	1639	1	0	1	0	0	0	copy fasta	CFAP74	chr1	1916957	2008786
CFAP77_chr9_132405211_132578319	1/1	a0001	284	247	78	53	71	15	28	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0002	284	57	4	9	40	0	4	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0003	284	6	0	0	6	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0004	284	4	4	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0005	284	4	1	2	0	1	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0006	284	1	0	0	1	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0007	284	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0008	284	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP77_chr9_132405211_132578319	0/0	a0009	284	1	1	0	0	0	0	copy fasta	CFAP77	chr9	132405211	132578319
CFAP90_chr5_7825378_7856133	1/0	a0001	147	311	54	56	155	13	32	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/1	a0002	147	68	21	11	24	3	8	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	a0003	71	16	1	0	15	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	a0004	147	15	14	1	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	a0005	147	6	6	0	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	a0006	147	2	0	0	2	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP90_chr5_7825378_7856133	0/0	a0007	147	2	0	2	0	0	0	copy fasta	CFAP90	chr5	7825378	7856133
CFAP91_chr3_119698022_119772102	0/1	a0001	767	316	43	59	160	14	39	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	1/0	a0002	767	21	19	1	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0003	767	12	10	2	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0004	767	7	0	0	7	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0005	767	6	6	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0006	767	5	5	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0007	766	4	0	0	4	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0008	767	3	3	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0009	767	2	0	2	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0010	767	2	2	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0011	767	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0012	767	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0013	767	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0014	767	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0015	767	1	0	0	1	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0016	767	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0017	767	1	1	0	0	0	0	copy fasta	CFAP91	chr3	119698022	119772102
CFAP91_chr3_119698022_119772102	0/0	a0018	767	1	0	0	0	0	1	copy fasta	CFAP91	chr3	119698022	119772102