JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CFAP92_chr3_128904873_128999076	1/0	a0001	1104	292	64	67	115	15	30	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0002	1104	23	9	0	7	0	7	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0003	1104	5	5	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0004	1103	3	2	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0005	1104	2	0	0	2	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0006	1104	2	1	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0007	1104	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0008	1104	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0009	505	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0010	1104	1	0	1	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0011	1104	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0012	1104	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/1	a0013	1104	1	0	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0014	1104	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0015	1104	1	0	0	0	1	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0016	1104	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0017	1104	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0018	1104	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0019	1104	1	0	0	0	0	1	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0020	1104	1	1	0	0	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP92_chr3_128904873_128999076	0/0	a0021	1104	1	0	0	1	0	0	copy fasta	CFAP92	chr3	128904873	128999076
CFAP95_chr9_69815817_69911227	1/1	a0001	229	363	86	62	155	16	42	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0002	229	7	0	0	7	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0003	229	4	4	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0004	229	2	0	2	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0005	229	1	0	1	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0006	229	1	0	1	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0007	229	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP95_chr9_69815817_69911227	0/0	a0008	229	1	1	0	0	0	0	copy fasta	CFAP95	chr9	69815817	69911227
CFAP97D1_chr17_43775435_43792620	1/1	a0001	164	400	90	84	166	10	48	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	a0002	164	1	0	0	1	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D1_chr17_43775435_43792620	0/0	a0003	164	1	0	0	1	0	0	copy fasta	CFAP97D1	chr17	43775435	43792620
CFAP97D2_chr13_114174257_114228085	1/1	a0001	98	399	94	78	175	10	40	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97D2_chr13_114174257_114228085	0/0	a0002	98	1	0	0	1	0	0	copy fasta	CFAP97D2	chr13	114174257	114228085
CFAP97_chr4_185154665_185209000	1/0	a0001	532	207	56	33	79	11	27	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/1	a0002	532	130	32	25	59	3	10	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0003	532	4	3	1	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0004	532	2	0	1	0	0	1	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0005	532	2	0	2	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0006	532	2	2	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0007	532	2	2	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP97_chr4_185154665_185209000	0/0	a0008	532	1	1	0	0	0	0	copy fasta	CFAP97	chr4	185154665	185209000
CFAP99_chr4_2413955_2468002	0/1	a0001	646	194	75	25	59	13	21	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0002	646	112	10	23	69	1	9	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0003	646	15	1	3	3	0	8	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0004	646	8	0	6	2	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0005	646	6	6	0	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0006	646	2	1	1	0	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0007	646	2	0	0	2	0	0	copy fasta	CFAP99	chr4	2413955	2468002
CFAP99_chr4_2413955_2468002	0/0	a0008	646	2	0	1	0	0	1	copy fasta	CFAP99	chr4	2413955	2468002