JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CGAS_chr6_73418711_73457297	0/0	a0001	522	202	44	40	102	3	13	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0002	522	155	33	21	68	13	20	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	1/0	a0003	522	41	12	7	15	2	4	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0004	522	3	3	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/1	a0005	522	3	0	1	0	0	1	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0006	522	2	0	2	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0007	522	1	0	0	1	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0008	522	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0009	522	1	1	0	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGAS_chr6_73418711_73457297	0/0	a0010	522	1	0	1	0	0	0	copy fasta	CGAS	chr6	73418711	73457297
CGA_chr6_87080498_87100106	1/1	a0001	116	420	92	70	198	18	40	copy fasta	CGA	chr6	87080498	87100106
CGB1_chr19_49030569_49041895	0/0	a0000	0	18	15	2	1	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	1/1	a0001	155	266	53	40	131	9	31	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0002	155	82	16	35	14	3	14	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0003	155	4	3	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0004	155	2	0	2	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0005	155	1	0	0	0	0	1	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0006	155	1	0	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0007	155	1	0	1	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB1_chr19_49030569_49041895	0/0	a0008	155	1	1	0	0	0	0	copy fasta	CGB1	chr19	49030569	49041895
CGB2_chr19_49026890_49038238	0/0	a0000	0	4	0	0	3	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0001	163	221	30	41	112	9	29	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0002	163	86	16	34	18	3	15	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0003	163	14	13	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0004	163	10	8	1	0	1	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0005	163	6	0	0	6	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0006	163	5	5	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0007	163	4	4	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0008	163	3	3	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0009	163	3	2	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0010	163	2	1	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0011	10	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0012	163	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0013	94	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0014	94	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0015	116	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0016	163	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0017	150	1	0	0	0	0	1	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0018	116	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0019	163	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0020	163	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0021	163	1	0	1	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0022	163	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0023	163	1	1	0	0	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0024	116	1	0	0	1	0	0	copy fasta	CGB2	chr19	49026890	49038238
CGB2_chr19_49026890_49038238	0/0	a0025	58	1	0	0	0	1	0	copy fasta	CGB2	chr19	49026890	49038238
CGB3_chr19_49017869_49029333	1/0	a0001	165	383	94	80	146	14	48	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	a0002	165	4	0	0	4	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	a0003	165	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	a0004	165	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333