JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CGB3_chr19_49017869_49029333	0/0	a0005	157	1	1	0	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB3_chr19_49017869_49029333	0/0	a0006	165	1	0	1	0	0	0	copy fasta	CGB3	chr19	49017869	49029333
CGB5_chr19_49038848_49050311	1/1	a0001	165	375	89	71	156	14	43	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	a0002	165	4	4	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	a0003	165	1	0	1	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	a0004	157	1	0	0	0	0	1	copy fasta	CGB5	chr19	49038848	49050311
CGB5_chr19_49038848_49050311	0/0	a0005	165	1	1	0	0	0	0	copy fasta	CGB5	chr19	49038848	49050311
CGB7_chr19_49049274_49062749	1/0	a0001	165	265	58	50	125	5	26	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/1	a0002	165	111	32	20	34	5	19	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0003	165	30	0	4	25	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0004	165	4	0	2	0	2	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0005	165	2	0	0	2	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0006	165	2	2	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0007	165	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0008	165	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0009	247	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0010	165	1	1	0	0	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0011	165	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0012	165	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0013	165	1	0	0	1	0	0	copy fasta	CGB7	chr19	49049274	49062749
CGB7_chr19_49049274_49062749	0/0	a0014	165	1	0	0	0	0	1	copy fasta	CGB7	chr19	49049274	49062749
CGB8_chr19_49042638_49054111	1/1	a0001	165	390	94	77	162	14	41	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	a0002	165	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	a0003	165	1	0	0	1	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	a0004	165	1	0	1	0	0	0	copy fasta	CGB8	chr19	49042638	49054111
CGB8_chr19_49042638_49054111	0/0	a0005	165	1	0	0	0	0	1	copy fasta	CGB8	chr19	49042638	49054111
CGGBP1_chr3_88046950_88064005	1/1	a0001	167	358	88	76	148	10	34	copy fasta	CGGBP1	chr3	88046950	88064005
CGNL1_chr15_57371505_57555717	0/0	a0001	1302	124	27	29	46	5	17	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0002	1302	61	25	17	14	0	5	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0003	1302	25	2	5	12	4	2	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0004	1302	22	2	7	8	2	3	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0005	1302	11	6	2	1	1	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0006	1302	9	8	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/1	a0007	1302	7	1	0	1	2	2	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0008	1302	5	5	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0009	1302	4	3	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0010	1302	3	3	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	1/0	a0011	1302	3	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0012	1302	2	1	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0013	1302	2	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0014	1302	2	2	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0015	1302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0016	1302	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0017	1302	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0018	1302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0019	1302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0020	1302	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0021	1302	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0022	1302	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0023	1302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717