JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CGNL1_chr15_57371505_57555717	0/0	a0024	1302	1	0	0	1	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0025	1302	1	0	1	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0026	1302	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0027	1302	1	0	0	0	0	1	copy fasta	CGNL1	chr15	57371505	57555717
CGNL1_chr15_57371505_57555717	0/0	a0028	1302	1	1	0	0	0	0	copy fasta	CGNL1	chr15	57371505	57555717
CGN_chr1_151506387_151543692	1/1	a0001	1203	279	60	54	126	10	27	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0002	1203	40	0	8	26	0	6	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0003	1203	18	18	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0004	1203	5	0	1	1	0	3	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0005	1203	5	0	1	3	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0006	1203	4	4	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0007	1203	3	0	0	3	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0008	1203	3	0	3	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0009	1203	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0010	1203	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0011	1203	2	2	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0012	1203	2	0	1	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0013	1203	2	0	0	2	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0014	1203	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0015	1203	1	0	0	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0016	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0017	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0018	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0019	1203	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0020	1203	1	0	0	0	0	1	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0021	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0022	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0023	1203	1	1	0	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0024	1203	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0025	1203	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0026	1203	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0027	1203	1	0	0	1	0	0	copy fasta	CGN	chr1	151506387	151543692
CGN_chr1_151506387_151543692	0/0	a0028	1203	1	0	1	0	0	0	copy fasta	CGN	chr1	151506387	151543692
CGREF1_chr2_27095594_27124128	0/1	a0001	301	328	80	76	118	18	35	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	1/0	a0002	318	14	12	1	0	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	a0003	301	6	0	0	6	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	a0004	301	2	0	1	0	0	1	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	a0005	301	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGREF1_chr2_27095594_27124128	0/0	a0006	301	1	0	0	1	0	0	copy fasta	CGREF1	chr2	27095594	27124128
CGRRF1_chr14_54504906_54544292	1/1	a0001	332	288	70	51	131	3	31	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	a0002	332	42	8	6	27	0	1	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	a0003	332	5	2	2	0	1	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	a0004	332	2	0	2	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CGRRF1_chr14_54504906_54544292	0/0	a0005	332	1	0	1	0	0	0	copy fasta	CGRRF1	chr14	54504906	54544292
CH25H_chr10_89200629_89212317	1/1	a0001	272	383	94	73	154	16	44	copy fasta	CH25H	chr10	89200629	89212317
CH25H_chr10_89200629_89212317	0/0	a0002	272	1	0	1	0	0	0	copy fasta	CH25H	chr10	89200629	89212317
CHAC1_chr15_40948471_40961512	1/1	a0001	222	411	92	71	190	15	41	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	a0002	222	3	0	2	0	1	0	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	a0003	222	2	0	1	0	0	1	copy fasta	CHAC1	chr15	40948471	40961512
CHAC1_chr15_40948471_40961512	0/0	a0004	222	1	0	0	1	0	0	copy fasta	CHAC1	chr15	40948471	40961512