JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CHDH_chr3_53807335_53851419	1/0	a0003	594	38	13	11	0	6	7	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	a0004	594	6	0	6	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	a0005	594	1	1	0	0	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHDH_chr3_53807335_53851419	0/0	a0006	470	1	0	0	1	0	0	copy fasta	CHDH	chr3	53807335	53851419
CHEK1_chr11_125620163_125662147	0/1	a0001	476	379	89	61	176	16	36	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	1/0	a0002	476	4	0	3	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK1_chr11_125620163_125662147	0/0	a0003	476	1	1	0	0	0	0	copy fasta	CHEK1	chr11	125620163	125662147
CHEK2_chr22_28682743_28746820	1/1	a0001	543	377	85	67	166	15	42	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0002	543	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0003	543	1	0	0	1	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0004	543	1	0	0	1	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0005	543	1	0	1	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0006	543	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0007	543	1	1	0	0	0	0	copy fasta	CHEK2	chr22	28682743	28746820
CHEK2_chr22_28682743_28746820	0/0	a0008	543	1	0	0	0	1	0	copy fasta	CHEK2	chr22	28682743	28746820
CHERP_chr19_16512894_16547437	1/1	a0001	916	329	90	72	109	10	46	copy fasta	CHERP	chr19	16512894	16547437
CHERP_chr19_16512894_16547437	0/0	a0002	916	1	0	0	1	0	0	copy fasta	CHERP	chr19	16512894	16547437
CHFR_chr12_132827356_132892605	1/0	a0001	652	221	49	39	111	7	14	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	a0002	652	89	17	21	33	5	13	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/1	a0003	652	55	19	13	7	6	9	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	a0004	652	9	0	0	9	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	a0005	652	2	2	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	a0006	652	1	0	1	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHFR_chr12_132827356_132892605	0/0	a0007	652	1	1	0	0	0	0	copy fasta	CHFR	chr12	132827356	132892605
CHGA_chr14_92918150_92940285	0/1	a0001	457	251	55	45	115	12	23	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0002	457	99	20	15	47	4	13	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0003	457	47	0	15	29	2	1	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0004	457	17	0	0	10	0	7	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0005	457	4	4	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0006	457	4	0	0	0	0	4	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0007	456	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0008	457	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0009	458	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0010	457	2	2	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0011	457	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0012	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0013	456	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0014	456	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0015	457	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0016	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0017	457	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0018	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0019	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0020	457	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0021	458	1	0	1	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0022	458	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0023	457	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0024	248	1	1	0	0	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0025	457	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285
CHGA_chr14_92918150_92940285	0/0	a0026	457	1	0	0	1	0	0	copy fasta	CHGA	chr14	92918150	92940285