JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CIT_chr12_119680791_119882320	0/0	a0007	2069	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0008	2069	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0009	2069	1	0	0	1	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0010	2069	1	1	0	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIT_chr12_119680791_119882320	0/0	a0011	2069	1	0	1	0	0	0	copy fasta	CIT	chr12	119680791	119882320
CIZ1_chr9_128161065_128196572	1/1	a0001	898	317	54	52	163	12	34	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0002	898	30	25	2	0	0	3	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0003	898	8	7	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0004	898	8	0	0	8	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0005	898	5	0	1	0	2	2	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0006	898	4	0	3	0	0	1	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0007	898	2	0	0	2	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0008	898	2	2	0	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0009	898	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0010	898	1	0	1	0	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0011	898	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CIZ1_chr9_128161065_128196572	0/0	a0012	898	1	0	0	1	0	0	copy fasta	CIZ1	chr9	128161065	128196572
CKAP2L_chr2_112731349_112769609	0/0	a0001	745	159	56	33	51	7	12	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0002	745	89	6	20	52	2	9	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0003	745	17	17	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0004	745	7	2	5	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0005	745	5	5	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/1	a0006	745	4	1	2	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0007	745	4	4	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0008	745	3	0	0	3	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0009	745	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0010	745	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0011	745	2	2	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0012	745	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0013	745	1	0	1	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	1/0	a0014	745	1	0	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0015	745	1	0	0	0	1	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0016	745	1	0	0	0	0	1	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2L_chr2_112731349_112769609	0/0	a0017	745	1	1	0	0	0	0	copy fasta	CKAP2L	chr2	112731349	112769609
CKAP2_chr13_52450478_52481627	0/1	a0001	682	382	88	70	168	13	42	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0002	682	7	0	1	4	0	2	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0003	682	4	3	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0004	682	3	0	2	0	1	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	1/0	a0005	682	2	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0006	682	2	1	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0007	682	1	0	0	1	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0008	682	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0009	682	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0010	682	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0011	682	1	0	0	1	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	a0012	682	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP4_chr12_106232881_106253020	1/0	a0001	602	148	12	41	71	5	18	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0002	601	122	10	12	84	4	12	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/1	a0003	601	116	65	19	6	7	18	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0004	602	8	7	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020