JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CKAP4_chr12_106232881_106253020	0/0	a0005	602	6	0	1	4	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0006	606	4	0	0	4	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0007	601	3	0	0	3	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0008	601	3	3	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0009	597	2	0	2	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0010	601	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0011	601	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0012	601	1	0	0	0	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0013	601	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0014	602	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	a0015	602	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP5_chr11_46738048_46851280	1/1	a0001	2032	290	90	58	112	8	20	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	a0002	2032	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	a0003	2032	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	a0004	2032	1	0	0	1	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	a0005	2032	1	0	0	1	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKB_chr14_103514667_103527830	1/1	a0001	381	425	96	82	189	10	46	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	a0002	381	2	0	0	2	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	a0003	381	1	0	0	1	0	0	copy fasta	CKB	chr14	103514667	103527830
CKLF_chr16_66547576_66571068	1/1	a0001	152	390	95	68	174	16	35	copy fasta	CKLF	chr16	66547576	66571068
CKLF_chr16_66547576_66571068	0/0	a0002	152	1	0	0	0	0	1	copy fasta	CKLF	chr16	66547576	66571068
CKLF_chr16_66547576_66571068	0/0	a0003	152	1	1	0	0	0	0	copy fasta	CKLF	chr16	66547576	66571068
CKMT1A_chr15_43688859_43704222	0/0	a0001	417	386	70	70	188	16	42	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	a0002	417	5	5	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	a0003	417	1	1	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1B_chr15_43589027_43604406	0/0	a0001	417	341	81	64	142	14	40	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	a0002	417	4	0	0	4	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	a0003	417	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	a0004	417	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	a0005	417	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT2_chr5_81228322_81271398	1/1	a0001	419	354	90	54	154	16	38	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	a0002	419	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	a0003	419	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKM_chr19_45301413_45327875	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	1/1	a0001	381	388	93	73	159	17	44	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	a0002	381	1	0	1	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	a0003	381	1	0	0	0	1	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	a0004	381	1	1	0	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKS1B_chr1_154969681_154984251	1/1	a0001	79	292	94	52	94	12	38	copy fasta	CKS1B	chr1	154969681	154984251
CKS2_chr9_89306195_89321703	1/1	a0001	79	440	94	68	212	18	46	copy fasta	CKS2	chr9	89306195	89321703
CLASP1_chr2_121332776_121654462	1/1	a0001	1559	203	77	40	71	0	13	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0002	1559	4	4	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0003	1559	2	0	0	2	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0004	1559	2	0	0	2	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0005	1559	1	0	0	0	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0006	1559	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	a0007	1559	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP2_chr3_33491245_33723254	1/1	a0001	1506	261	79	45	97	13	25	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	a0002	1506	12	1	6	4	1	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	a0003	1506	2	0	0	2	0	0	copy fasta	CLASP2	chr3	33491245	33723254