JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLASP2_chr3_33491245_33723254	0/0	a0004	1506	1	0	1	0	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	a0005	1506	1	0	0	1	0	0	copy fasta	CLASP2	chr3	33491245	33723254
CLASP2_chr3_33491245_33723254	0/0	a0006	1506	1	0	0	0	0	1	copy fasta	CLASP2	chr3	33491245	33723254
CLASRP_chr19_45034045_45075956	1/1	a0001	674	343	95	68	129	10	39	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0002	674	7	0	0	7	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0003	436	6	2	0	4	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0004	674	2	0	2	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0005	674	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0006	674	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0007	674	1	0	0	0	0	1	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0008	674	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0009	674	1	0	0	1	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLASRP_chr19_45034045_45075956	0/0	a0010	670	1	1	0	0	0	0	copy fasta	CLASRP	chr19	45034045	45075956
CLBA1_chr14_104980788_105000516	1/1	a0001	325	421	87	76	199	13	44	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0002	325	10	0	0	10	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0003	325	4	4	0	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0004	325	3	1	0	0	0	2	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0005	325	1	0	0	0	1	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0006	325	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0007	325	1	0	0	1	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0008	325	1	0	1	0	0	0	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0009	325	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLBA1_chr14_104980788_105000516	0/0	a0010	325	1	0	0	0	0	1	copy fasta	CLBA1	chr14	104980788	105000516
CLCA1_chr1_86463927_86505259	0/1	a0001	914	307	39	60	158	10	39	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0002	914	42	29	4	4	2	3	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0003	914	27	1	9	16	1	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0004	914	17	6	5	2	0	4	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0005	914	12	1	1	9	0	1	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0006	914	5	5	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0007	914	4	0	0	4	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0008	914	4	4	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0009	914	3	3	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0010	914	3	2	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0011	914	3	2	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0012	914	2	1	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	1/0	a0013	914	2	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0014	914	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0015	914	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0016	914	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0017	914	1	0	0	0	0	1	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0018	914	1	0	0	0	1	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0019	914	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0020	914	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0021	914	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	a0022	914	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA2_chr1_86419171_86461553	1/1	a0001	943	309	64	44	166	7	26	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0002	943	59	9	19	21	2	8	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0003	943	24	13	8	1	0	2	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0004	943	9	2	0	4	0	3	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	a0005	943	4	0	2	0	2	0	copy fasta	CLCA2	chr1	86419171	86461553