JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLEC14A_chr14_38249000_38261093	0/0	a0004	490	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0005	490	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0006	490	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0007	490	1	1	0	0	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0008	490	1	0	0	0	0	1	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0009	490	1	0	0	0	0	1	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC14A_chr14_38249000_38261093	0/0	a0010	490	1	0	0	1	0	0	copy fasta	CLEC14A	chr14	38249000	38261093
CLEC16A_chr16_10939564_11187186	1/1	a0001	1053	264	77	52	91	14	28	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	a0002	1053	6	6	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	a0003	1053	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	a0004	1053	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	a0005	1053	1	0	0	1	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC16A_chr16_10939564_11187186	0/0	a0006	1053	1	1	0	0	0	0	copy fasta	CLEC16A	chr16	10939564	11187186
CLEC17A_chr19_14578084_14617035	1/1	a0001	378	323	69	67	139	18	28	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0002	379	27	21	1	1	0	4	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0003	378	8	0	1	2	0	5	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0004	378	1	0	1	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0005	352	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0006	378	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0007	378	1	0	0	0	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0008	378	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	a0009	353	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC18A_chr16_69946334_69968986	0/0	a0001	446	128	44	9	65	1	9	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0002	446	87	12	16	43	3	13	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	1/0	a0003	446	49	2	22	5	5	14	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0004	446	34	0	14	18	0	2	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0005	446	17	0	0	14	0	3	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0006	446	17	0	5	11	0	1	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0007	446	10	1	4	0	2	3	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0008	446	6	0	0	6	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0009	446	4	4	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0010	445	3	3	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0011	446	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0012	446	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0013	446	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0014	446	2	0	1	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0015	446	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0016	446	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0017	446	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0018	446	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0019	446	1	0	0	0	1	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0020	446	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0021	446	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0022	446	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0023	446	1	0	0	0	0	1	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0024	446	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0025	446	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0026	446	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0027	446	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	a0028	446	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986