JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CLTCL1_chr22_19174473_19296719	0/0	a0020	1640	1	0	1	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0021	1640	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0022	1640	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0023	1640	1	1	0	0	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTCL1_chr22_19174473_19296719	0/0	a0024	1546	1	0	0	1	0	0	copy fasta	CLTCL1	chr22	19174473	19296719
CLTC_chr17_59614895_59701956	1/1	a0001	1675	259	86	40	91	4	36	copy fasta	CLTC	chr17	59614895	59701956
CLTC_chr17_59614895_59701956	0/0	a0002	1675	1	0	0	1	0	0	copy fasta	CLTC	chr17	59614895	59701956
CLTRN_chrX_15622318_15669805	1/1	a0001	222	294	69	56	130	11	26	copy fasta	CLTRN	chrX	15622318	15669805
CLTRN_chrX_15622318_15669805	0/0	a0002	222	1	1	0	0	0	0	copy fasta	CLTRN	chrX	15622318	15669805
CLUAP1_chr16_3496004_3544048	1/1	a0001	413	252	65	43	107	12	23	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0002	413	66	3	17	23	4	19	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0003	413	39	1	6	29	0	3	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0004	413	11	11	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0005	413	6	5	0	0	0	1	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0006	413	4	4	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0007	413	2	0	0	2	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0008	413	1	0	0	1	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUAP1_chr16_3496004_3544048	0/0	a0009	413	1	1	0	0	0	0	copy fasta	CLUAP1	chr16	3496004	3544048
CLUH_chr17_2684387_2716764	1/1	a0001	1348	295	85	58	116	10	24	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0002	1348	94	6	13	53	6	16	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0003	1348	11	0	0	10	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0004	1348	5	0	0	5	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0005	1348	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0006	1348	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0007	1348	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0008	1348	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0009	1348	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0010	1348	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0011	1348	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0012	1348	1	0	1	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0013	1348	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0014	1348	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0015	1348	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0016	1348	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0017	1348	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0018	568	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	a0019	1348	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUL1_chr18_591988_655182	1/1	a0001	466	405	89	78	170	18	48	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0002	466	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0003	466	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0004	466	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0005	466	1	0	0	1	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0006	466	1	0	0	1	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	a0007	466	1	1	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLU_chr8_27591917_27619700	1/1	a0001	449	423	71	77	207	18	48	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0002	449	19	18	1	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0003	449	7	7	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0004	449	2	0	0	0	0	2	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0005	449	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	a0006	449	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700