JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL17A1_chr10_104026286_104090880	0/0	a0004	1497	32	4	12	9	1	6	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0005	1497	23	2	2	14	2	3	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0006	1497	14	10	2	2	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0007	1497	11	10	0	1	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0008	1497	9	2	1	6	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0009	1497	8	1	0	7	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0010	1488	4	4	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0011	1497	3	0	0	3	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0012	1497	2	0	0	2	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0013	1497	2	2	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0014	1497	2	0	0	2	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0015	1497	1	0	0	0	0	1	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0016	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0017	1497	1	0	0	0	0	1	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0018	1497	1	0	0	1	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0019	1497	1	0	0	1	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0020	1497	1	0	0	1	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0021	1488	1	0	0	0	0	1	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0022	1497	1	0	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0023	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0024	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0025	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0026	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0027	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0028	1497	1	0	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0029	1497	1	0	1	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL17A1_chr10_104026286_104090880	0/0	a0030	1497	1	1	0	0	0	0	copy fasta	COL17A1	chr10	104026286	104090880
COL18A1_chr21_45400165_45518720	0/0	a0001	1336	200	47	43	75	9	26	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0002	1336	14	8	3	0	0	3	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0003	1336	14	0	1	10	0	3	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0004	1339	6	6	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	1/0	a0005	1339	5	1	0	3	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/1	a0006	1336	5	1	1	0	0	2	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0007	1336	5	0	0	5	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0008	1336	4	4	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0009	1336	3	0	2	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0010	1336	3	0	0	3	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0011	1336	3	3	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0012	1339	2	1	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0013	1336	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0014	1339	2	2	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0015	1336	2	0	0	0	2	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0016	1336	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0017	1336	1	0	0	1	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0018	1339	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0019	1336	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0020	1333	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0021	810	1	0	0	0	0	1	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0022	1339	1	1	0	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720
COL18A1_chr21_45400165_45518720	0/0	a0023	1339	1	0	1	0	0	0	copy fasta	COL18A1	chr21	45400165	45518720