JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COL5A3_chr19_9954561_10015504	0/0	a0060	1742	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0061	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0062	1745	1	0	0	0	1	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0063	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0064	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0065	1745	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0066	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0067	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0068	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0069	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0070	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0071	1745	1	1	0	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0072	1745	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0073	1745	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0074	1745	1	0	1	0	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0075	1745	1	0	0	0	0	1	copy fasta	COL5A3	chr19	9954561	10015504
COL5A3_chr19_9954561_10015504	0/0	a0076	1745	1	0	0	1	0	0	copy fasta	COL5A3	chr19	9954561	10015504
COL6A1_chr21_45976770_46010048	1/1	a0001	1028	60	13	15	18	2	10	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0002	1028	32	13	13	1	3	2	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0003	1028	9	1	2	2	3	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0004	1028	6	0	1	4	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0005	1028	5	4	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0006	1028	2	0	1	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0007	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0008	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0009	1028	1	0	1	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0010	1028	1	0	0	0	1	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0011	1028	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0012	1028	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0013	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0014	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0015	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0016	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0017	1028	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0018	1028	1	0	0	1	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0019	1028	1	0	0	0	0	1	copy fasta	COL6A1	chr21	45976770	46010048
COL6A1_chr21_45976770_46010048	0/0	a0020	1028	1	1	0	0	0	0	copy fasta	COL6A1	chr21	45976770	46010048
COL6A2_chr21_46093112_46134801	0/1	a0001	36	256	42	52	125	11	25	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	1/0	a0002	918	58	22	4	13	3	15	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0003	918	48	18	6	18	3	3	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0004	918	3	3	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0005	918	2	0	0	1	1	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0006	918	2	2	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0007	918	1	0	0	1	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0008	918	1	0	0	0	0	1	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46134801	0/0	a0009	918	1	1	0	0	0	0	copy fasta	COL6A2	chr21	46093112	46134801
COL6A2_chr21_46093112_46137848	0/1	a0001	36	249	40	52	120	11	25	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	1/0	a0002	1019	55	19	4	13	3	15	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0003	1019	24	9	3	10	0	2	copy fasta	COL6A2	chr21	46093112	46137848
COL6A2_chr21_46093112_46137848	0/0	a0004	1019	17	9	3	3	1	1	copy fasta	COL6A2	chr21	46093112	46137848