JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
COLEC12_chr18_311737_505701	0/0	a0013	742	1	0	1	0	0	0	copy fasta	COLEC12	chr18	311737	505701
COLGALT1_chr19_17550649_17588157	1/1	a0001	622	382	93	74	151	16	46	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0002	408	8	0	2	6	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0003	622	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0004	622	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0005	622	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0006	622	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0007	622	1	1	0	0	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT1_chr19_17550649_17588157	0/0	a0008	622	1	0	0	1	0	0	copy fasta	COLGALT1	chr19	17550649	17588157
COLGALT2_chr1_183930834_184042728	1/1	a0001	626	312	79	68	111	13	39	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0002	626	10	0	0	10	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0003	626	4	4	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0004	626	2	2	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0005	626	2	0	0	2	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0006	626	2	0	0	2	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0007	626	2	0	0	2	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0008	626	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0009	626	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0010	626	1	0	0	0	1	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0011	626	1	0	0	1	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0012	626	1	1	0	0	0	0	copy fasta	COLGALT2	chr1	183930834	184042728
COLGALT2_chr1_183930834_184042728	0/0	a0013	626	1	0	0	0	0	1	copy fasta	COLGALT2	chr1	183930834	184042728
COLQ_chr3_15445133_15526706	1/1	a0001	455	355	69	66	172	12	34	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	a0002	455	17	17	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	a0003	455	6	6	0	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	a0004	455	2	0	0	2	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	a0005	455	1	0	1	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COLQ_chr3_15445133_15526706	0/0	a0006	455	1	0	1	0	0	0	copy fasta	COLQ	chr3	15445133	15526706
COMMD10_chr5_116080025_116298287	1/1	a0001	202	287	61	58	123	10	33	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	a0002	202	61	24	4	30	2	1	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	a0003	202	1	0	0	1	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD10_chr5_116080025_116298287	0/0	a0004	202	1	1	0	0	0	0	copy fasta	COMMD10	chr5	116080025	116298287
COMMD1_chr2_61900674_62141058	1/1	a0001	190	284	88	36	122	8	28	copy fasta	COMMD1	chr2	61900674	62141058
COMMD1_chr2_61900674_62141058	0/0	a0002	190	2	0	0	0	2	0	copy fasta	COMMD1	chr2	61900674	62141058
COMMD2_chr3_149733472_149757489	1/1	a0001	199	349	94	54	162	9	28	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	a0002	199	73	3	16	34	5	15	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	a0003	199	1	1	0	0	0	0	copy fasta	COMMD2	chr3	149733472	149757489
COMMD2_chr3_149733472_149757489	0/0	a0004	94	1	0	0	0	0	1	copy fasta	COMMD2	chr3	149733472	149757489
COMMD3_chr10_22311388_22325306	1/1	a0001	195	253	54	52	111	8	26	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	a0002	195	54	44	8	0	0	2	copy fasta	COMMD3	chr10	22311388	22325306
COMMD3_chr10_22311388_22325306	0/0	a0003	195	1	0	0	1	0	0	copy fasta	COMMD3	chr10	22311388	22325306
COMMD4_chr15_75331063_75345273	1/1	a0001	199	427	92	74	201	16	42	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	a0002	199	2	2	0	0	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD4_chr15_75331063_75345273	0/0	a0003	199	1	0	0	1	0	0	copy fasta	COMMD4	chr15	75331063	75345273
COMMD5_chr8_144845176_144858048	1/0	a0001	224	329	91	59	146	11	21	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/1	a0002	224	94	2	22	49	3	17	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	a0003	224	2	2	0	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	a0004	224	2	1	1	0	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD5_chr8_144845176_144858048	0/0	a0005	224	1	0	0	1	0	0	copy fasta	COMMD5	chr8	144845176	144858048
COMMD6_chr13_75520214_75542841	1/1	a0001	85	394	93	72	169	14	44	copy fasta	COMMD6	chr13	75520214	75542841