JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CPS1_chr2_210551599_210684107	0/0	a0009	1500	2	2	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0010	1500	2	0	0	2	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0011	1500	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0012	1500	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0013	1500	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0014	1500	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0015	1500	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0016	1500	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0017	1500	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0018	1500	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	a0019	1500	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPSF1_chr8_144388231_144414335	1/1	a0001	1443	334	94	66	117	16	39	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0002	1443	3	0	0	3	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0003	1443	2	0	0	2	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0004	1443	1	0	0	0	0	1	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0005	1443	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0006	1443	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0007	1443	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0008	1443	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0009	1443	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0010	1443	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0011	1443	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0012	1443	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0013	1443	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	a0014	1443	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF2_chr14_92116969_92177145	1/1	a0001	782	387	86	60	183	12	44	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	a0002	782	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF3_chr2_9418654_9478101	1/1	a0001	684	229	86	60	40	10	31	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	a0002	684	1	0	0	0	0	1	copy fasta	CPSF3	chr2	9418654	9478101
CPSF4L_chr17_73243449_73266880	1/1	a0001	179	393	92	72	171	12	44	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	a0002	179	4	0	0	4	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	a0003	179	1	0	0	1	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4_chr7_99433943_99462373	1/1	a0001	269	364	92	64	152	16	38	copy fasta	CPSF4	chr7	99433943	99462373
CPSF6_chr12_69234569_69279358	1/1	a0001	551	392	82	70	190	12	36	copy fasta	CPSF6	chr12	69234569	69279358
CPSF7_chr11_61397729_61434975	1/1	a0001	462	190	88	40	28	6	26	copy fasta	CPSF7	chr11	61397729	61434975
CPT1A_chr11_68749883_68846916	1/1	a0001	773	229	76	46	70	13	22	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	a0002	773	4	4	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	a0003	773	3	0	2	0	1	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1B_chr22_50563861_50583427	0/1	a0001	772	135	11	28	74	7	14	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0002	772	99	48	9	29	2	11	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0003	772	67	3	9	45	0	10	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	1/0	a0004	772	66	23	17	10	3	12	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0005	772	35	8	2	24	0	1	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0006	772	3	3	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0007	772	3	0	0	3	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0008	772	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0009	772	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0010	594	1	0	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0011	772	1	0	1	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	a0012	772	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427