JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CSF3R_chr1_36461043_36487913	1/1	a0001	836	374	71	56	193	14	38	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0002	836	30	21	6	0	2	1	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0003	836	5	5	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0004	836	3	0	0	2	0	1	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0005	836	2	0	0	0	2	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0006	836	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0007	836	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0008	836	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0009	836	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0010	836	1	0	1	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	a0011	836	1	0	1	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3_chr17_40010440_40022813	1/1	a0001	204	426	87	70	205	16	46	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	a0002	204	4	4	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	a0003	204	3	3	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	a0004	204	1	0	0	1	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSGALNACT1_chr8_19399161_19762277	0/0	a0001	532	156	37	41	49	11	18	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	1/1	a0002	532	62	29	4	10	5	12	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0003	532	6	6	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0004	532	3	0	0	3	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0005	532	2	0	2	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0006	532	1	0	0	1	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0007	532	1	0	0	1	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0008	532	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0009	532	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0010	532	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0011	532	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0012	532	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0013	532	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	a0014	532	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT2_chr10_43133445_43190302	1/0	a0001	542	323	86	55	139	9	33	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/1	a0002	542	66	1	17	33	5	9	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	a0003	542	5	4	1	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	a0004	542	3	2	1	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	a0005	542	1	1	0	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSH1_chr17_63889918_63901574	1/1	a0001	217	411	75	81	190	15	48	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	a0002	217	8	8	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	a0003	217	4	1	1	1	1	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	a0004	217	4	4	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	a0005	217	1	0	0	1	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH2_chr17_63867016_63878677	0/0	a0000	0	1	0	0	0	1	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0001	217	365	89	61	157	15	43	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0002	217	31	0	2	29	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0003	217	9	0	0	6	0	3	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0004	217	1	1	0	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0005	217	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0006	217	1	0	1	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	a0007	217	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSHL1_chr17_63904608_63916258	1/1	a0001	222	287	76	52	117	11	29	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0002	222	130	6	22	82	7	13	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	a0003	222	10	10	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258