Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADCK1_chr14_77795109_77940014	0/0	a0002	523	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	a0003	523	1	0	1	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	a0004	523	1	0	0	1	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	a0005	523	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	a0006	523	1	0	0	0	0	1	copy fasta	ADCK1	chr14	77795109	77940014
ADCK2_chr7_140667945_140700110	1/1	a0001	626	172	22	43	70	14	21	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0002	626	49	41	6	2	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0003	626	47	15	11	13	1	7	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0004	626	6	5	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0005	626	5	5	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0006	626	3	0	2	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0007	626	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0008	626	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0009	626	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0010	626	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0011	626	1	0	0	0	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0012	626	1	0	0	1	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0013	626	1	0	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	a0014	626	1	0	0	0	1	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK5_chr8_144369047_144398242	1/0	a0001	580	208	78	37	62	4	26	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/1	a0002	585	121	13	25	58	11	13	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0003	580	5	2	0	2	0	1	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0004	585	4	0	0	4	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0005	580	3	0	0	3	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0006	510	1	0	1	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0007	585	1	0	0	1	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0008	234	1	0	0	0	1	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0009	580	1	1	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	a0010	580	1	0	1	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCY10_chr1_167804386_167919134	0/0	a0001	1610	159	22	27	95	2	13	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	1/0	a0002	1610	118	43	18	28	7	21	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0003	1610	14	6	4	0	3	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0004	1610	10	9	1	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0005	1610	5	0	2	2	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0006	1610	1	0	0	0	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0007	1610	1	0	1	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0008	1610	1	0	0	0	1	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0009	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0010	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0011	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0012	1610	1	0	0	0	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0013	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/1	a0014	1610	1	0	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0015	1610	1	1	0	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0016	1610	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0017	1610	1	0	1	0	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0018	1610	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0019	1610	1	0	0	0	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0020	1610	1	0	0	0	0	1	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	a0021	1610	1	0	0	0	1	0	copy fasta	ADCY10	chr1	167804386	167919134