Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRE5_chr19_14376444_14413723	0/0	a0012	835	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0013	835	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0014	835	1	0	0	0	1	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0015	835	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0016	835	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0017	835	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0018	835	1	0	1	0	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRE5_chr19_14376444_14413723	0/0	a0019	835	1	0	0	1	0	0	copy fasta	ADGRE5	chr19	14376444	14413723
ADGRF1_chr6_46992708_47047332	1/1	a0001	910	284	44	54	144	9	31	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0002	910	84	38	12	33	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0003	910	9	2	5	0	1	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0004	910	6	0	0	6	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0005	910	3	3	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0006	910	3	2	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0007	910	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0008	910	2	0	0	2	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0009	910	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0010	523	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0011	910	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0012	910	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0013	910	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0014	910	1	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	a0015	910	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF3_chr2_26303175_26351789	0/0	a0001	1004	168	45	40	58	11	14	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	1/1	a0002	1004	84	18	14	34	4	12	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0003	1004	11	0	0	10	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0004	1004	10	10	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0005	1004	5	1	4	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0006	1004	4	0	1	0	2	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0007	1004	4	1	2	0	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0008	1004	4	3	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0009	1004	3	0	3	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0010	1004	3	1	2	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0011	1004	2	2	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0012	1004	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0013	1004	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0014	1004	2	1	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0015	1004	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0016	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0017	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0018	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0019	1004	1	0	0	0	1	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0020	1004	1	0	0	0	0	1	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0021	1004	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0022	1004	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0023	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0024	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0025	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0026	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0027	1004	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789