JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DSG1_chr18_31313160_31364246	0/0	a0006	1049	7	0	4	1	0	2	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0007	1049	5	5	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0008	1049	4	0	2	2	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0009	1049	4	4	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0010	1049	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0011	1049	3	1	1	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0012	1049	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0013	1049	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0014	1049	3	3	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0015	1049	2	0	0	2	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0016	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0017	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0018	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0019	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0020	1049	2	0	0	1	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0021	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0022	1049	2	0	2	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0023	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0024	1049	2	2	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0025	1049	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0026	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0027	1049	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0028	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0029	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0030	1049	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0031	1049	1	0	1	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0032	1049	1	0	0	1	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0033	1049	1	0	0	0	0	1	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0034	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0035	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0036	1049	1	1	0	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0037	1049	1	0	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0038	1049	1	0	0	0	1	0	copy fasta	DSG1	chr18	31313160	31364246
DSG2_chr18_31493177_31554008	1/0	a0001	1118	220	80	36	79	6	18	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/1	a0002	1118	104	5	16	64	5	13	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0003	1118	8	0	6	0	2	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0004	1118	6	0	1	5	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0005	1118	4	4	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0006	1118	3	3	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0007	1118	2	2	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0008	1118	1	0	0	1	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0009	1118	1	0	1	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0010	1118	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0011	1118	1	0	0	0	0	1	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0012	1118	1	0	0	1	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0013	1118	1	1	0	0	0	0	copy fasta	DSG2	chr18	31493177	31554008
DSG2_chr18_31493177_31554008	0/0	a0014	1118	1	0	0	0	1	0	copy fasta	DSG2	chr18	31493177	31554008
DSG3_chr18_31442741_31483702	0/0	a0001	999	282	69	57	121	7	28	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0002	999	31	7	0	18	0	6	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0003	999	10	10	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702