JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DUSP8_chr11_1549051_1577271	0/0	a0006	625	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0007	630	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0008	621	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0009	625	1	0	0	1	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0010	625	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0011	625	1	1	0	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0012	625	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0013	625	1	0	0	0	1	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP8_chr11_1549051_1577271	0/0	a0014	625	1	0	1	0	0	0	copy fasta	DUSP8	chr11	1549051	1577271
DUSP9_chrX_153642203_153656326	1/1	a0001	384	319	75	61	142	9	30	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0002	138	2	0	0	0	0	2	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0003	384	2	0	2	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0004	384	2	2	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0005	317	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0006	384	1	1	0	0	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUSP9_chrX_153642203_153656326	0/0	a0007	172	1	0	0	1	0	0	copy fasta	DUSP9	chrX	153642203	153656326
DUT_chr15_48326429_48348373	1/1	a0001	252	380	91	57	179	10	41	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	a0002	252	4	0	0	4	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	a0003	252	1	1	0	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	a0004	252	1	0	0	0	0	1	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	a0005	252	1	0	0	1	0	0	copy fasta	DUT	chr15	48326429	48348373
DUT_chr15_48326429_48348373	0/0	a0006	252	1	0	1	0	0	0	copy fasta	DUT	chr15	48326429	48348373
DUXA_chr19_57149021_57172485	1/1	a0001	204	443	96	82	201	16	46	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	a0002	204	1	0	0	1	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	a0003	204	1	1	0	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXA_chr19_57149021_57172485	0/0	a0004	204	1	1	0	0	0	0	copy fasta	DUXA	chr19	57149021	57172485
DUXB_chr16_75688893_75706461	1/1	a0001	345	244	69	46	88	11	28	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0002	345	154	4	28	108	0	14	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0003	345	10	5	2	2	1	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0004	345	7	5	2	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0005	345	4	4	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0006	94	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0007	345	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DUXB_chr16_75688893_75706461	0/0	a0008	345	1	1	0	0	0	0	copy fasta	DUXB	chr16	75688893	75706461
DVL1_chr1_1330278_1354418	1/1	a0001	695	312	65	60	124	15	46	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0002	695	22	21	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0003	695	3	0	0	3	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0004	695	2	2	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0005	695	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0006	695	1	1	0	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0007	695	1	0	0	1	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0008	695	1	0	1	0	0	0	copy fasta	DVL1	chr1	1330278	1354418
DVL1_chr1_1330278_1354418	0/0	a0009	60	1	0	0	0	1	0	copy fasta	DVL1	chr1	1330278	1354418
DVL2_chr17_7220342_7239517	1/1	a0001	736	393	87	70	178	16	40	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0002	736	3	0	0	3	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0003	736	2	2	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0004	736	2	0	0	2	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0005	736	2	0	0	2	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0006	736	1	0	1	0	0	0	copy fasta	DVL2	chr17	7220342	7239517
DVL2_chr17_7220342_7239517	0/0	a0007	736	1	1	0	0	0	0	copy fasta	DVL2	chr17	7220342	7239517