JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
EGFL7_chr9_136657916_136677678	0/0	a0011	273	1	0	1	0	0	0	copy fasta	EGFL7	chr9	136657916	136677678
EGFL8_chr6_32159595_32173281	0/1	a0001	293	383	70	72	196	12	32	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	a0002	293	40	19	7	3	4	7	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	a0003	293	7	1	0	5	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	a0004	293	1	0	0	0	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	a0005	73	1	0	0	0	0	1	copy fasta	EGFL8	chr6	32159595	32173281
EGFL8_chr6_32159595_32173281	0/0	a0006	293	1	0	1	0	0	0	copy fasta	EGFL8	chr6	32159595	32173281
EGFLAM_chr5_38253559_38470480	1/0	a0001	1009	75	22	17	18	5	12	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/1	a0002	1009	37	16	7	11	1	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0003	1009	18	15	1	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0004	1009	14	10	2	2	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0005	1009	7	1	1	2	2	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0006	1009	7	2	2	3	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0007	1009	4	0	1	3	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0008	1009	3	2	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0009	1009	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0010	1009	2	1	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0011	1009	2	0	2	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0012	1009	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0013	1009	2	2	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0014	1009	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0015	1009	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0016	1009	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0017	1009	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0018	1009	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0019	1009	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0020	1009	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0021	1009	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0022	1009	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0023	1009	1	0	0	0	0	1	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0024	1009	1	0	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0025	1009	1	0	1	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0026	1009	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0027	1009	1	1	0	0	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFLAM_chr5_38253559_38470480	0/0	a0028	1009	1	0	0	1	0	0	copy fasta	EGFLAM	chr5	38253559	38470480
EGFR_chr7_55014017_55216628	1/1	a0001	1210	179	84	47	17	5	24	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	a0002	1210	68	7	16	24	7	14	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	a0003	1210	1	0	0	1	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	a0004	1210	1	1	0	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGFR_chr7_55014017_55216628	0/0	a0005	1210	1	0	1	0	0	0	copy fasta	EGFR	chr7	55014017	55216628
EGF_chr4_109907883_110018766	0/0	a0001	1207	142	41	25	62	3	11	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0002	1207	81	7	17	43	5	9	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0003	1152	44	0	0	36	0	8	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0004	1207	40	1	5	29	1	4	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0005	1207	20	16	2	2	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	1/0	a0006	1207	14	1	5	0	1	6	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0007	1207	7	0	0	7	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0008	1207	7	0	0	7	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0009	1207	5	4	1	0	0	0	copy fasta	EGF	chr4	109907883	110018766
EGF_chr4_109907883_110018766	0/0	a0010	1207	4	0	0	4	0	0	copy fasta	EGF	chr4	109907883	110018766