JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CKAP2_chr13_52450478_52481627	0/0	c0015	2049	1	0	1	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP2_chr13_52450478_52481627	0/0	c0016	2049	1	1	0	0	0	0	copy fasta	CKAP2	chr13	52450478	52481627
CKAP4_chr12_106232881_106253020	1/0	c0001	1809	146	12	41	71	5	16	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0002	1806	118	10	12	80	4	12	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/1	c0003	1806	95	54	17	6	6	11	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0004	1806	14	4	2	0	1	7	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0005	1809	8	7	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0006	1809	6	0	1	4	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0007	1806	4	0	0	4	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0008	1821	4	0	0	4	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0009	1806	3	3	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0010	1806	3	3	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0011	1806	3	0	0	3	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0012	1794	2	0	2	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0013	1806	2	2	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0014	1809	2	0	0	0	0	2	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0015	1806	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0016	1806	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0017	1806	1	0	0	0	0	1	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0018	1806	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0019	1806	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0020	1806	1	1	0	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0021	1809	1	0	0	1	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP4_chr12_106232881_106253020	0/0	c0022	1809	1	0	1	0	0	0	copy fasta	CKAP4	chr12	106232881	106253020
CKAP5_chr11_46738048_46851280	1/1	c0001	6099	220	57	51	92	7	11	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0002	6099	37	27	5	0	1	4	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0003	6099	13	1	1	8	0	3	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0004	6099	9	0	0	9	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0005	6099	3	0	0	3	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0006	6099	2	2	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0007	6099	2	2	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0008	6099	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0009	6099	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0010	6099	1	0	0	0	0	1	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0011	6099	1	0	0	1	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0012	6099	1	1	0	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0013	6099	1	0	0	0	0	1	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0014	6099	1	0	1	0	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKAP5_chr11_46738048_46851280	0/0	c0015	6099	1	0	0	1	0	0	copy fasta	CKAP5	chr11	46738048	46851280
CKB_chr14_103514667_103527830	0/0	c0001	1146	267	33	57	144	5	28	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	1/1	c0002	1146	131	43	22	44	5	15	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0003	1146	13	12	0	0	0	1	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0004	1146	11	7	2	0	0	2	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0005	1146	2	0	0	2	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0007	1146	1	1	0	0	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0008	1146	1	0	0	1	0	0	copy fasta	CKB	chr14	103514667	103527830
CKB_chr14_103514667_103527830	0/0	c0009	1146	1	0	1	0	0	0	copy fasta	CKB	chr14	103514667	103527830
CKLF_chr16_66547576_66571068	1/1	c0001	459	389	95	68	174	15	35	copy fasta	CKLF	chr16	66547576	66571068
CKLF_chr16_66547576_66571068	0/0	c0002	459	1	0	0	0	1	0	copy fasta	CKLF	chr16	66547576	66571068