JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CKLF_chr16_66547576_66571068	0/0	c0003	459	1	0	0	0	0	1	copy fasta	CKLF	chr16	66547576	66571068
CKLF_chr16_66547576_66571068	0/0	c0004	459	1	1	0	0	0	0	copy fasta	CKLF	chr16	66547576	66571068
CKMT1A_chr15_43688859_43704222	0/0	c0001	1254	375	66	68	185	15	41	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0002	1254	5	5	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0003	1254	4	1	1	1	0	1	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0004	1254	4	3	1	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0005	1254	2	0	0	2	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0006	1254	1	1	0	0	0	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1A_chr15_43688859_43704222	0/0	c0007	1254	1	0	0	0	1	0	copy fasta	CKMT1A	chr15	43688859	43704222
CKMT1B_chr15_43589027_43604406	0/0	c0001	1254	302	70	62	116	14	40	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0002	1254	31	9	2	20	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0003	1254	5	0	0	5	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0004	1254	4	0	0	4	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0005	1254	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0006	1254	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0007	1254	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0008	1254	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0009	1254	1	0	0	1	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT1B_chr15_43589027_43604406	0/0	c0010	1254	1	1	0	0	0	0	copy fasta	CKMT1B	chr15	43589027	43604406
CKMT2_chr5_81228322_81271398	1/1	c0001	1260	348	84	54	154	16	38	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	c0002	1260	3	3	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	c0003	1260	2	2	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	c0004	1260	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	c0005	1260	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKMT2_chr5_81228322_81271398	0/0	c0006	1260	1	1	0	0	0	0	copy fasta	CKMT2	chr5	81228322	81271398
CKM_chr19_45301413_45327875	1/0	c0001	1146	145	11	34	86	3	10	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/1	c0002	1146	97	27	19	22	10	18	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0003	1146	83	41	11	29	0	2	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0004	1146	39	1	6	22	2	8	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0005	1146	12	7	1	0	0	4	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0006	1146	5	2	0	0	2	1	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0007	1146	3	2	0	0	0	1	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0008	1146	2	1	1	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0009	1146	1	0	0	0	1	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0010	1146	1	1	0	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0011	1146	1	0	1	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0012	1146	1	0	1	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0013	1146	1	0	0	1	0	0	copy fasta	CKM	chr19	45301413	45327875
CKM_chr19_45301413_45327875	0/0	c0014	1146	1	1	0	0	0	0	copy fasta	CKM	chr19	45301413	45327875
CKS1B_chr1_154969681_154984251	1/1	c0001	240	288	94	52	90	12	38	copy fasta	CKS1B	chr1	154969681	154984251
CKS1B_chr1_154969681_154984251	0/0	c0002	240	4	0	0	4	0	0	copy fasta	CKS1B	chr1	154969681	154984251
CKS2_chr9_89306195_89321703	1/1	c0001	240	440	94	68	212	18	46	copy fasta	CKS2	chr9	89306195	89321703
CLASP1_chr2_121332776_121654462	1/1	c0001	4680	117	29	24	54	0	8	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0002	4680	83	47	15	17	0	4	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0003	4680	4	4	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0004	4680	2	0	0	2	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0005	4680	2	0	0	2	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0006	4680	1	0	0	0	0	1	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0007	4680	1	1	0	0	0	0	copy fasta	CLASP1	chr2	121332776	121654462
CLASP1_chr2_121332776_121654462	0/0	c0008	4680	1	0	0	1	0	0	copy fasta	CLASP1	chr2	121332776	121654462