JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCA1_chr1_86463927_86505259	0/1	c0003	2745	75	11	12	38	1	12	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0004	2745	57	3	3	39	2	10	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0005	2745	28	20	4	3	1	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0006	2745	20	1	8	10	1	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0007	2745	13	8	0	1	1	3	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0008	2745	7	4	1	0	0	2	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0009	2745	7	0	1	6	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0010	2745	5	5	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0011	2745	5	0	0	5	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0012	2745	5	0	3	2	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0013	2745	4	1	1	2	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0014	2745	4	1	1	0	0	2	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0015	2745	3	3	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0016	2745	3	2	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0017	2745	3	0	0	3	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0018	2745	3	3	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	1/0	c0019	2745	2	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0020	2745	2	1	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0021	2745	2	1	1	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0022	2745	2	0	0	1	0	1	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0023	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0024	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0025	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0026	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0027	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0028	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0029	2745	1	0	0	0	0	1	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0030	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0031	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0032	2745	1	0	0	0	1	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0033	2745	1	0	0	0	0	1	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0034	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0035	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0036	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0037	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0038	2745	1	0	0	1	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0039	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA1_chr1_86463927_86505259	0/0	c0040	2745	1	1	0	0	0	0	copy fasta	CLCA1	chr1	86463927	86505259
CLCA2_chr1_86419171_86461553	1/1	c0001	2832	198	45	34	98	5	14	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0002	2832	92	5	9	64	2	12	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0003	2832	59	9	19	21	2	8	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0004	2832	17	10	7	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0005	2832	9	2	0	4	0	3	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0006	2832	6	6	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0007	2832	4	0	2	0	2	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0008	2832	3	0	0	3	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0009	2832	3	2	1	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0010	2832	3	2	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0011	2832	3	3	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0012	2832	2	0	0	2	0	0	copy fasta	CLCA2	chr1	86419171	86461553