JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLCA2_chr1_86419171_86461553	0/0	c0013	2832	2	0	0	0	0	2	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0014	2832	2	2	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0015	2832	2	0	0	0	0	2	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0016	2832	2	0	1	0	1	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0017	2832	1	0	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0018	2832	1	0	0	0	0	1	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0019	2832	1	0	1	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0020	2832	1	0	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0021	2832	1	1	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0022	2832	1	0	0	1	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA2_chr1_86419171_86461553	0/0	c0023	2832	1	1	0	0	0	0	copy fasta	CLCA2	chr1	86419171	86461553
CLCA4_chr1_86542078_86585754	0/0	c0001	2754	182	38	31	75	11	27	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	1/1	c0002	2760	52	16	15	10	3	6	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0003	2760	51	6	0	45	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0004	2754	14	14	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0005	2754	9	7	0	1	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0006	2754	5	4	1	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0007	2766	4	1	2	0	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0008	2754	3	1	2	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0009	2754	2	0	0	2	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0010	2754	2	0	0	2	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0011	2754	2	2	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0012	2754	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0013	2754	1	0	0	0	0	1	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0014	2760	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0015	2748	1	1	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0016	2754	1	1	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0017	2754	1	0	0	1	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0018	2760	1	0	1	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCA4_chr1_86542078_86585754	0/0	c0019	2754	1	1	0	0	0	0	copy fasta	CLCA4	chr1	86542078	86585754
CLCC1_chr1_108924505_108968484	1/0	c0001	1656	157	24	34	74	8	16	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0002	1656	129	14	24	76	4	11	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0003	1656	84	49	8	10	4	13	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0004	1656	6	5	1	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0005	1656	5	2	1	0	2	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0006	1656	3	0	0	3	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0007	1656	3	3	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0008	1656	2	0	2	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0009	1656	1	0	0	1	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0010	1656	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0011	1656	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/0	c0012	1656	1	1	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCC1_chr1_108924505_108968484	0/1	c0013	1656	1	0	0	0	0	0	copy fasta	CLCC1	chr1	108924505	108968484
CLCF1_chr11_67359168_67378598	1/1	c0001	678	261	75	52	92	6	34	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0002	678	39	13	3	23	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0003	678	2	1	1	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0004	678	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0005	678	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0006	678	1	0	0	1	0	0	copy fasta	CLCF1	chr11	67359168	67378598
CLCF1_chr11_67359168_67378598	0/0	c0007	678	1	1	0	0	0	0	copy fasta	CLCF1	chr11	67359168	67378598