Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAM21_chr14_70447174_70464905	0/0	c0024	2169	1	0	0	0	0	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0025	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	1/0	c0026	2169	1	0	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0027	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0028	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0029	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0030	2169	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0031	2169	1	0	0	0	0	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0032	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0033	2169	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0034	2169	1	0	0	0	0	1	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0035	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0036	2169	1	0	0	1	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0037	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0038	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM21_chr14_70447174_70464905	0/0	c0039	2169	1	1	0	0	0	0	copy fasta	ADAM21	chr14	70447174	70464905
ADAM22_chr7_87929251_88207889	0/1	c0001	2895	137	58	27	34	9	8	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	1/0	c0002	2895	46	1	6	28	2	8	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0003	2895	22	9	4	5	1	3	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0004	2895	5	0	0	5	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0005	2895	3	1	0	2	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0006	2895	2	0	0	2	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0007	2898	2	2	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0008	2895	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0009	2895	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0010	2895	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0011	2895	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0012	2895	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0013	2895	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0014	2895	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0015	2895	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0016	2895	1	0	0	1	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0017	2895	1	0	1	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0018	2895	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0019	2895	1	1	0	0	0	0	copy fasta	ADAM22	chr7	87929251	88207889
ADAM22_chr7_87929251_88207889	0/0	c0020	2895	1	0	0	0	0	1	copy fasta	ADAM22	chr7	87929251	88207889
ADAM23_chr2_206438532_206626127	1/1	c0001	2499	275	60	55	123	12	23	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0002	2499	77	26	13	30	2	6	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0003	2499	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0004	2499	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0005	2499	1	1	0	0	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0006	2499	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0007	2499	1	0	0	0	0	1	copy fasta	ADAM23	chr2	206438532	206626127
ADAM23_chr2_206438532_206626127	0/0	c0008	2499	1	0	0	1	0	0	copy fasta	ADAM23	chr2	206438532	206626127
ADAM28_chr8_24289069_24364014	0/1	c0001	2328	210	41	36	98	7	27	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0002	2328	48	0	9	36	3	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0003	2328	27	1	1	20	0	5	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	1/0	c0004	2328	9	5	0	0	0	3	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0005	2328	7	5	2	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014
ADAM28_chr8_24289069_24364014	0/0	c0006	2328	7	7	0	0	0	0	copy fasta	ADAM28	chr8	24289069	24364014