JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLDN9_chr16_3007923_3019505	0/0	c0002	655	12	2	2	5	0	3	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0003	654	5	4	1	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0004	654	2	0	1	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0005	654	2	0	2	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0006	654	2	0	0	2	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0007	654	2	2	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0008	654	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0009	654	1	1	0	0	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0010	654	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDN9_chr16_3007923_3019505	0/0	c0011	654	1	0	0	1	0	0	copy fasta	CLDN9	chr16	3007923	3019505
CLDND1_chr3_98510483_98527902	1/1	c0001	762	433	92	77	200	16	46	copy fasta	CLDND1	chr3	98510483	98527902
CLDND1_chr3_98510483_98527902	0/0	c0002	762	1	0	1	0	0	0	copy fasta	CLDND1	chr3	98510483	98527902
CLDND2_chr19_51362098_51374003	1/1	c0001	504	305	54	54	153	5	37	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0002	504	83	5	29	32	11	6	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0003	504	18	16	2	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0004	504	14	13	1	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0005	504	5	5	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0006	504	5	0	0	5	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0007	504	4	4	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0008	504	2	2	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0009	504	1	0	0	0	0	1	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0010	504	1	1	0	0	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0011	504	1	0	0	1	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLDND2_chr19_51362098_51374003	0/0	c0012	504	1	0	0	1	0	0	copy fasta	CLDND2	chr19	51362098	51374003
CLEC10A_chr17_7069537_7085251	1/1	c0001	870	185	5	51	89	9	29	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0002	870	145	52	24	50	5	14	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0003	870	48	10	0	36	0	2	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0004	870	27	12	3	12	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0005	870	18	4	1	13	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0006	870	16	3	1	9	1	2	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0007	870	7	7	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0008	870	3	1	0	0	1	1	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0009	870	3	0	0	3	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0010	870	2	2	0	0	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0011	870	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0012	870	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0013	870	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC10A_chr17_7069537_7085251	0/0	c0014	870	1	0	0	1	0	0	copy fasta	CLEC10A	chr17	7069537	7085251
CLEC11A_chr19_50718364_50730708	1/0	c0001	972	317	87	68	115	10	36	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/1	c0002	972	43	10	9	13	6	4	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0003	972	4	0	0	4	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0004	972	2	0	0	2	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0005	972	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0006	972	1	0	1	0	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0007	972	1	1	0	0	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0008	972	1	0	0	0	0	1	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0009	972	1	0	0	0	0	1	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0010	972	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0011	972	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708
CLEC11A_chr19_50718364_50730708	0/0	c0012	972	1	0	0	1	0	0	copy fasta	CLEC11A	chr19	50718364	50730708