JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLEC17A_chr19_14578084_14617035	0/0	c0003	1137	8	0	1	2	0	5	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0004	1062	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0005	1137	1	1	0	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0006	1137	1	0	0	0	0	1	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0007	1137	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0008	1059	1	0	0	1	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC17A_chr19_14578084_14617035	0/0	c0009	1137	1	0	1	0	0	0	copy fasta	CLEC17A	chr19	14578084	14617035
CLEC18A_chr16_69946334_69968986	0/0	c0001	1341	118	35	9	64	1	9	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0002	1341	86	12	16	42	3	13	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	1/0	c0003	1341	49	2	22	5	5	14	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0004	1341	32	0	14	16	0	2	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0005	1341	17	0	0	14	0	3	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0006	1341	17	0	5	11	0	1	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0007	1341	9	0	4	0	2	3	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0008	1341	7	7	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0009	1341	6	0	0	6	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0010	1341	4	4	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0011	1338	3	3	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0012	1341	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0013	1341	2	0	0	2	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0014	1341	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0015	1341	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0016	1341	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0017	1341	2	2	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0018	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0019	1341	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0020	1341	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0021	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0022	1341	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0023	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0024	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0025	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0026	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0027	1341	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0028	1341	1	0	1	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0029	1341	1	0	0	0	1	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0030	1341	1	0	0	0	0	1	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0031	1341	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0032	1341	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0033	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0034	1341	1	0	0	1	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0035	1341	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18A_chr16_69946334_69968986	0/0	c0036	1341	1	1	0	0	0	0	copy fasta	CLEC18A	chr16	69946334	69968986
CLEC18B_chr16_74403631_74426478	0/0	c0001	1341	117	18	17	63	2	17	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0002	1341	71	16	16	30	2	7	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	1/0	c0003	1341	37	7	2	25	0	2	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0004	1341	18	0	0	18	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0005	1341	11	0	9	2	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0006	1341	10	6	4	0	0	0	copy fasta	CLEC18B	chr16	74403631	74426478
CLEC18B_chr16_74403631_74426478	0/0	c0007	1341	3	0	0	3	0	0	copy fasta	CLEC18B	chr16	74403631	74426478