JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLIP3_chr19_36009660_36037873	0/0	c0008	1644	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0009	1618	1	0	0	1	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0010	1644	1	0	1	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0011	1644	1	1	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP3_chr19_36009660_36037873	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	CLIP3	chr19	36009660	36037873
CLIP4_chr2_29110415_29188808	1/0	c0001	2118	109	26	23	45	5	9	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/1	c0002	2118	108	43	14	39	3	8	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0003	2118	24	9	4	3	2	6	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0004	2118	7	1	5	0	1	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0005	2118	7	1	5	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0006	2118	5	0	0	5	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0007	2118	4	0	0	4	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0008	2118	4	1	1	0	1	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0009	2118	3	0	2	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0010	2118	2	2	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0011	2118	2	0	0	0	2	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0012	2118	2	2	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0013	2118	1	0	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0014	2118	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0015	2118	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0016	2118	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0017	2118	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0018	2118	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0019	2118	1	0	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0020	2118	1	0	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0021	2118	1	0	1	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0022	2118	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0023	2118	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0024	2118	1	0	0	0	0	1	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0025	2118	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0026	2118	1	1	0	0	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLIP4_chr2_29110415_29188808	0/0	c0027	2118	1	0	0	1	0	0	copy fasta	CLIP4	chr2	29110415	29188808
CLK1_chr2_200848009_200869658	1/1	c0001	1455	402	83	71	182	18	46	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0002	1455	11	11	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0003	1455	1	1	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0004	1455	1	0	0	1	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0005	1455	1	0	0	1	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0006	1455	1	0	1	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK1_chr2_200848009_200869658	0/0	c0007	1455	1	1	0	0	0	0	copy fasta	CLK1	chr2	200848009	200869658
CLK2_chr1_155257868_155278504	0/1	c0001	1500	325	90	42	136	14	42	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0002	1500	1	0	1	0	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0003	1500	1	0	1	0	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0004	1500	1	0	0	0	0	1	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0005	1500	1	0	0	1	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0006	1500	1	0	0	1	0	0	copy fasta	CLK2	chr1	155257868	155278504
CLK2_chr1_155257868_155278504	0/0	c0007	1500	1	0	0	0	0	1	copy fasta	CLK2	chr1	155257868	155278504
CLK3_chr15_74610836_74635201	1/1	c0001	1473	332	68	53	164	14	31	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	c0002	1473	13	11	2	0	0	0	copy fasta	CLK3	chr15	74610836	74635201
CLK3_chr15_74610836_74635201	0/0	c0003	1473	5	0	1	4	0	0	copy fasta	CLK3	chr15	74610836	74635201