JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CLUH_chr17_2684387_2716764	0/0	c0037	4047	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0038	4047	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0039	4047	1	0	0	1	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0040	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0041	4047	1	0	0	0	0	1	copy fasta	CLUH	chr17	2684387	2716764
CLUH_chr17_2684387_2716764	0/0	c0042	4047	1	1	0	0	0	0	copy fasta	CLUH	chr17	2684387	2716764
CLUL1_chr18_591988_655182	1/1	c0001	1401	397	83	77	170	18	47	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0002	1401	3	3	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0003	1401	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0004	1401	2	1	1	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0005	1401	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0006	1401	2	2	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0007	1401	1	1	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0008	1401	1	0	0	0	0	1	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0009	1401	1	0	0	1	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0011	1401	1	1	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLUL1_chr18_591988_655182	0/0	c0012	1401	1	1	0	0	0	0	copy fasta	CLUL1	chr18	591988	655182
CLU_chr8_27591917_27619700	0/1	c0001	1350	300	48	50	157	8	36	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	1/0	c0002	1350	100	2	26	50	10	11	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0003	1350	15	15	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0004	1350	15	14	1	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0005	1350	7	7	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0006	1350	4	4	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0007	1350	3	1	1	0	0	1	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0008	1350	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0009	1350	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0010	1350	2	2	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0011	1350	2	0	0	0	0	2	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0012	1350	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0013	1350	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0014	1350	1	0	0	1	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0015	1350	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0016	1350	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLU_chr8_27591917_27619700	0/0	c0017	1350	1	1	0	0	0	0	copy fasta	CLU	chr8	27591917	27619700
CLVS1_chr8_61282970_61506629	1/1	c0001	1065	183	60	48	50	4	19	copy fasta	CLVS1	chr8	61282970	61506629
CLVS1_chr8_61282970_61506629	0/0	c0002	1065	1	0	0	0	0	1	copy fasta	CLVS1	chr8	61282970	61506629
CLVS2_chr6_122991235_123077925	1/1	c0001	984	329	87	59	136	12	33	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	c0002	984	5	5	0	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	c0003	984	1	0	1	0	0	0	copy fasta	CLVS2	chr6	122991235	123077925
CLVS2_chr6_122991235_123077925	0/0	c0004	984	1	0	0	0	0	1	copy fasta	CLVS2	chr6	122991235	123077925
CLXN_chr8_48718391_48740268	1/1	c0001	636	390	93	70	169	14	42	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	c0002	636	2	0	2	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	c0003	636	1	1	0	0	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLXN_chr8_48718391_48740268	0/0	c0004	636	1	0	0	1	0	0	copy fasta	CLXN	chr8	48718391	48740268
CLYBL_chr13_99601690_99897570	0/1	c0001	1023	170	65	38	39	7	20	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	1/0	c0002	1023	20	4	9	3	2	1	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0003	1023	11	0	2	8	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0004	1023	6	0	0	5	1	0	copy fasta	CLYBL	chr13	99601690	99897570
CLYBL_chr13_99601690_99897570	0/0	c0005	1023	2	2	0	0	0	0	copy fasta	CLYBL	chr13	99601690	99897570